Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0660 ATGGGAATTGCTAATCTCTCATACGAGGAATGTCGTCGCAAAAGAGTGGAAGAAAATAAGAAGAGAATGGAAGCCCTAAATCTTCCTTTGCTTTCTCAAGCTCTCATTGAATCTTCTTCTCCTTCTAAGTCTTCCCCTAGTAAGATAGCTAAGCCTCGGATGATTCAGAAACAACTGGTGATGGTTAGGAGATCGAGTCGCGTGGCGAAGCAATCTGCTCCGGTTTACGCCGAAGTTCTTGTTGATCGTGTGGTAATTCCTAGAAGGATCTCTAAACCTAGAGATTTTTCGAACCGGATTTACGCTTCCGATGAAGGAAGGAGAGATGCATTTGAAAGAGCAGAGAAACTACAATCTGGGTTGGACCAGAATTGTCCCATTTTGATAAGGTCAATGCTTCAGTCTCATGTTAGTGGTGGATTCTGGCTGGGCCTTCCTTGTCATTTCTGCAAGAGGCATCTTCCAAGGCATGATGGAGTTATGACTTTAATAGATGAACATGGTGATGAGTATCCAGTAATATATTTGGCACGGAAGTCGGGACTCAGCGGTGGATGGAAGGGGTTTGCAGTTGCTCATGAATTGGGAGATGGGGATTCAGTCGTTTTTCATTTCATTAAATCTACAGAATGCAAGGTTTACATCGTGAGGGTGAATAGATCCAGTGAAGAAAGAGGCAGCAGCAGCTAG 690 43.91 MGIANLSYEECRRKRVEENKKRMEALNLPLLSQALIESSSPSKSSPSKIAKPRMIQKQLVMVRRSSRVAKQSAPVYAEVLVDRVVIPRRISKPRDFSNRIYASDEGRRDAFERAEKLQSGLDQNCPILIRSMLQSHVSGGFWLGLPCHFCKRHLPRHDGVMTLIDEHGDEYPVIYLARKSGLSGGWKGFAVAHELGDGDSVVFHFIKSTECKVYIVRVNRSSEERGSSS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4288397 4289828 - evm.model.ptg000015l.660 HCH4g0660 542904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0660 229 Gene3D - 103 220 IPR015300 -
HCH4g0660 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 222 IPR044837 -
HCH4g0660 229 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677(InterPro)
HCH4g0660 229 SMART B3_2 128 219 IPR003340 GO:0003677(InterPro)
HCH4g0660 229 CDD B3_DNA 126 217 IPR003340 GO:0003677(InterPro)
HCH4g0660 229 Pfam B3 DNA binding domain 132 219 IPR003340 GO:0003677(InterPro)
HCH4g0660 229 SUPERFAMILY DNA-binding pseudobarrel domain 122 219 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0660 HCH-Chr4:4288397 HCH7g0634 HCH-Chr7:6218175 1.60E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33459 PF02362 B3 3.20E-14 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0660 - - - 0.0