Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0675 ATGCCTCTCTTTCACAAAACTCATTCCAATTCTCCTCTTCATCAGAAACTCCGACCAGATGATGAATTTTCCGTCAGCCTTCCGGAACCGTTGGTTAACCGGCGGCTAACGAGGCAAAGGAAGCTCCGGTATCTTACCGACCAGGATGTTGGTTTTGAATTACCTGAACATCCTCGCTCCTCTTCTGCTTCGTTTGATTTGTCTGGGAGACCGAGATCGCCTCCTAGTGGTTCTTCAGAACGTTGGTCGTCGGCGGCACTGCCTCAACCTTTGCCTCATCCTGAGTTGTTTTTGTCTCGAAATCCTCCGTCTGGGTCTTGGAGTTCTGGGTTTGGTCATCTTGGGTCACCGGAAGAAGTTCCGGTCCGGAAGAGTGCCGATCATGTAATGACAAATCATAGTAAGAATTTGGGCAATAATCAAAGGCGAATTGCTAATGATTTGACATTGGAAGTTGTTAATGGTAGTATAGGATGGAATGGTCCTACTTCAAGTATTCCATTGAGAGGCCCTCAAAGTCTCTCTGTGAACTCAAGAAGATCGAATGTGGGATTTGTTTTTAGTTCTATGGAACAACCTCCAAACAACAATGGAAGGGGAGTCCCAAATGATCTAAATGTAGAAAGGGGCAATTATAATTTGACACTGAAAGTGTTATCGAGGAGTGCGCCAACAAGTATTTTACCGAGTCCTGCCGTTAGCCCACGAAGATCTAACACTGGAGATCTTTTCAATTCTGTTTTGACTCGCCAAGAATATGAGGACTCTCCTCCCAGTATTTCTCCCAAAGTATTAACTGTGAAAAATGCACTTGGTTCTCAACATTCTCCTCTCAATAGTCCGACAGCTCGAAGTCCCCTAAACAATCCCAGATCTCCTAACAATATTCCACTTCCTCTGCATCATAAATTACAAAACGACAATAATATAGATCGGTCTGAAAACCACGGTCATGTCAATGCCCATCCGTTGCCCCTCCCTCCTCCCTCCATAGGTACTTCACAATTATCTCCACAATCTCATCCTTCTAGCATTCATCACGTTCTTGAAAAGCCACATGTATCATCATCAATGAAAGGTCAGTGGCAGAAAGGAAAGCTCATTGGACGAGGTACATTTGGAAGTGTTTATCTTGCTACAAACCGAGAAACTGGCGCTTTATGTGCAATGAAAGAAGTGGACCTCATTCCGGATGATCCTAAGTCTGCTGAATGTATAAAGCAATTGGAGCAGGAAATTAAAGTTCTCAGTCAACTTAAACATCCAAATATAGTGCAGTATCATGGAAGTGAAATCATTGATGATCATTTCTACATATATTTGGAGTATATTTATCCTGGATCAATAAATAAATATGTTCGTGAACACTGTGGTACTATTACGGAATCCATTATTCGCAATTTTACCCGCCATATTCTCTCTGGGCTGGCTTACCTGCATAGCACCAAGACAATCCATAGGGATATCAAAGGTGCAAACTTACTAGTTGACTCATCAGGCGTAGTCAAACTTGCAGATTTTGGGATGGCAAAACATCTGACAGGGCAGTATGATCTTTCTTTGAAGGGTAGTCCGTACTGGATGGCTCCAGAGGTAATAAAGGCTGCTATGCTGAAAGATGCAGACCCTGATTTAGCTTTGGCAGTTGACATTTGGAGCCTAGGTTGCACCATCATTGAAATGCTGGATGGAAAACCTCCTTGGAGTGAGTATGAAGGGCATCAAGCCATGTTCAAGGTGTTGAATGTAACCCCACCGATACCCGAAAAACTATCTCCAGAAGGGAAAGACTTCCTTGAGTGGTGCTTTGAAAGGAATCCGGCTGAGAGACCAACTGCCATTATGCTCCTTGACCATCCTTTTCTTAGATCCTCAAATGACTCAAATGTTGCAATCACCACCTCAACATTTTCAACGATGAACCTCTTGGAAAAATTACTGTCTCCAAAGGACCACCGTAATCGTAAAGGAGATAAGACGCAAGACTCTCCTGGAAATTGGGTCATGAATGATTATCTGTCATGCCGTAGCCCTTCGACAAACATTTCTGGTAACATTCACGCCAGTGCTGTTACCAACCATCACTTTGCTCTTTCAAGGAATCATAAGAGGGAAGTGCCATACCTCTAA 2130 43.33 MPLFHKTHSNSPLHQKLRPDDEFSVSLPEPLVNRRLTRQRKLRYLTDQDVGFELPEHPRSSSASFDLSGRPRSPPSGSSERWSSAALPQPLPHPELFLSRNPPSGSWSSGFGHLGSPEEVPVRKSADHVMTNHSKNLGNNQRRIANDLTLEVVNGSIGWNGPTSSIPLRGPQSLSVNSRRSNVGFVFSSMEQPPNNNGRGVPNDLNVERGNYNLTLKVLSRSAPTSILPSPAVSPRRSNTGDLFNSVLTRQEYEDSPPSISPKVLTVKNALGSQHSPLNSPTARSPLNNPRSPNNIPLPLHHKLQNDNNIDRSENHGHVNAHPLPLPPPSIGTSQLSPQSHPSSIHHVLEKPHVSSSMKGQWQKGKLIGRGTFGSVYLATNRETGALCAMKEVDLIPDDPKSAECIKQLEQEIKVLSQLKHPNIVQYHGSEIIDDHFYIYLEYIYPGSINKYVREHCGTITESIIRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQYDLSLKGSPYWMAPEVIKAAMLKDADPDLALAVDIWSLGCTIIEMLDGKPPWSEYEGHQAMFKVLNVTPPIPEKLSPEGKDFLEWCFERNPAERPTAIMLLDHPFLRSSNDSNVAITTSTFSTMNLLEKLLSPKDHRNRKGDKTQDSPGNWVMNDYLSCRSPSTNISGNIHASAVTNHHFALSRNHKREVPYL 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4388153 4393216 - evm.model.ptg000015l.675 HCH4g0675 542919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0675 709 ProSiteProfiles Protein kinase domain profile. 362 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0675 709 MobiDBLite consensus disorder prediction 61 85 - -
HCH4g0675 709 Pfam Protein kinase domain 363 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0675 709 MobiDBLite consensus disorder prediction 272 344 - -
HCH4g0675 709 MobiDBLite consensus disorder prediction 1 21 - -
HCH4g0675 709 SMART serkin_6 362 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0675 709 FunFam Mitogen-activated protein kinase kinase kinase 5 359 659 - -
HCH4g0675 709 SUPERFAMILY Protein kinase-like (PK-like) 359 638 IPR011009 -
HCH4g0675 709 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 93 627 IPR050538 -
HCH4g0675 709 Gene3D Transferase(Phosphotransferase) domain 1 359 662 - -
HCH4g0675 709 ProSitePatterns Protein kinases ATP-binding region signature. 368 391 IPR017441 GO:0005524(InterPro)
HCH4g0675 709 MobiDBLite consensus disorder prediction 52 119 - -
HCH4g0675 709 MobiDBLite consensus disorder prediction 272 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0675 HCH-Chr4:4388153 HCH5g0821 HCH-Chr5:6454165 3.20E-91 dispersed
HCH14g0260 HCH-Chr14:30500614 HCH4g0675 HCH-Chr4:4388153 4.50E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81456 PF00069 Pkinase 9.00E-68 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0675 - - - 0.0