Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0682 ATGTTCCAAAGCTCAAACCATATGATGAAAACGCCACCGCTGCTGCCGTTTCCGGATCTCTCCTTGCAGATATGTCCACCGGCACTGTCGTCGATGTCGGTAGTACCCGAATTAGGTAAACCAATGTACAATGAGAGGAGCTCTGTCACTGATTCCGGCAGCAGCGATGGCAGCGATTTAAGCCATGAGAATACAGTCTTTCTTCATGGTAAATCCCATCTAGGTCTTGGGATGGAACTTTCAAGAAAATTTAATGGTGGCCATTTTAACCAACAACCTCAAATCTATGGACGAGGTTTCAAGAGAAGTCCGAGGATGGTGTGTGGTGTCAAAAGAAGCATGAGAGCTCCTAGAATGAGATGGACTACGACCCTCCATGCCCATTTTGTTCACGCAGTCCAGCTTCTCGGAGGACATGAAAGGGCAACACCGAAATCTGTATTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGTCATTTGCAGATGTACAGAACAGTAAAGAGCACTGATAAAGGAACTGGCCAAGGACAGATGACAGATTCATCCTTGAACCAAACGCCTGGAGCAAATTGTGAGAGTTCTAATCCAACCCTTCAAATGGACTTGTTCTCAACATCAACGGAGACAAATCATTATATGACGACCACATGGAGTCAACAAGCTTTATCATCCAACAATGGTATTGGAAACAAGCAGCAGGACCGACAAAACACAACGATCAATAATAATATCTCTAGTGGCGTGAAGGAGATGTTGGATTCTAGCTGCTTGTCGTCGTCTGATCATCATCTCTATACACTTAACTTAGAATTCACACTTGGCCGATCACCATCCTCGCAATCCATGGATTCTTCTCACTCTCCTACTCAACTTACCCTTCTCAATTGTTAA 906 44.37 MFQSSNHMMKTPPLLPFPDLSLQICPPALSSMSVVPELGKPMYNERSSVTDSGSSDGSDLSHENTVFLHGKSHLGLGMELSRKFNGGHFNQQPQIYGRGFKRSPRMVCGVKRSMRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTGQGQMTDSSLNQTPGANCESSNPTLQMDLFSTSTETNHYMTTTWSQQALSSNNGIGNKQQDRQNTTINNNISSGVKEMLDSSCLSSSDHHLYTLNLEFTLGRSPSSQSMDSSHSPTQLTLLNC 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4433593 4435894 + evm.model.ptg000015l.682 HCH4g0682 542926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0682 301 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 285 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
HCH4g0682 301 Gene3D - 116 173 - -
HCH4g0682 301 MobiDBLite consensus disorder prediction 173 197 - -
HCH4g0682 301 MobiDBLite consensus disorder prediction 43 63 - -
HCH4g0682 301 SUPERFAMILY Homeodomain-like 114 171 IPR009057 -
HCH4g0682 301 Pfam Myb-like DNA-binding domain 118 169 IPR001005 -
HCH4g0682 301 NCBIfam myb-like DNA-binding domain, SHAQKYF class 117 170 IPR006447 GO:0003677(InterPro)
HCH4g0682 301 MobiDBLite consensus disorder prediction 45 62 - -
HCH4g0682 301 FunFam Myb family transcription factor 115 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0682 HCH-Chr4:4433593 HCH5g0246 HCH-Chr5:1429104 1.70E-30 dispersed
HCH14g0805 HCH-Chr14:36040822 HCH4g0682 HCH-Chr4:4433593 6.20E-15 transposed
HCH14g0992 HCH-Chr14:37254367 HCH4g0682 HCH-Chr4:4433593 2.70E-19 transposed
HCH12g0669 HCH-Chr12:4090619 HCH4g0682 HCH-Chr4:4433593 4.80E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33463 PF00249 Myb_DNA-binding 1.20E-05 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0682 - - - 0.0