Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0689 ATGTTTCATTCTCTCCACAATGATGACGAAACCGAAACCGATTCTGATCATTCATTCATGGTAGAAGAAAATCACATCAATGACTTCTATCAAACTTCCTCTCCGCCTTCGCTTGACTATTCCATTTTAACGCAATCAGAATTACGTAAACTTCAGAATGAACAAATCACAACGGTTTCTTCCGTTCTCTCTCTAACAGAAGCAGCAGCGATCCTCTTACTCTGTCACCGTAATTGGAACGTAAGTAAAGTTAATGATGTTTGGTTCTCTGATGAAGCTAAAGTTCGTAAATTTGTCGGGCTGTTTGAGAATCCGGTAGTCGTTAAAACCCTTAATTCAGATTCTCGAAAGTTGATGCTTTGTGGGATTTGCTTGGAAAATTGTGAAGTTTATGATATGTGTTCCGTTTCTTGTAATCACTTGTTTTGTAGAGATTGTTGGAAATCTTATATTAGTATTTCAATTAATGATGGGGGGTCTTCTTGTTTATTGCTTAAATGTCCTTATCCTTCTTGTGGGGCTGCTGTGGATAGGGATATGATTGATGAATTTGGTATGAAAGAAGAGAGAGAGAGATTTGGGAGTTATCTTTTGAGGTCGTTTGTGGAACAGAGTAAGAGAATGAAGTGGTGTCCATCTCCTGGATGTGAGTTTGTAGTTGAGTTTTGTGGTGGTCCTGGTGGAGGTGATTTTGATGTTGTTTGCTTATGTGATAATCGGTTTTGCTGGAATTGTTGTTGGGAAATTCATCGGCCAGTGGATTGCGATACGGTCAAAAGGTGGGAAATGAAGAACAAGAGTGAAGCTGAAAACACAAAATGGATACTGGCTAATACAAAGCCTTGTCCTAAATGTAAGAAACCAATTGAGAAGAATCAAGGTTGTAATGTGATGACATGTCGGTCCCCGTGTCTGTTTCGGTTCTGCTGGCTCTGTCTTCACGACATATCGGATCATCGATCGGCTTCTTGTAATGGATTTGTGGCCAATGCAGAGGAAGAGAGTGAGGTGGAGGACAAAAGAGAAAATGCCAGGATACATTTGAGGAAATACACACATTACTTTGAACGCTGGGAAAATAATCGAAAGTCGAGGCACAAAGCCATCAAAGATTTAGAATTGGTGAAAACGGATAAGATGGAGAGACTTAACCAGATTCAGGACCACCCCATTTCCGAGCTGCGGTTCTTGAGTGAGGCTTGGTTACAAATAATTGAAAGTAGGAGAGTTCTTCAATGGAGCTATGCTTATGGATACTATCTCCCAGAGGAGGAGAAGGGGAAAAAGCAACTTTTTGAGTACTTACAAGGACAGGCCGAATTGATTCTTGAAAGGCTTCATCATTGTGCAGAAGATGAGGTTTTACAGTTCCTCAGTATGAGTAATCCATCGGAGAGTTTCATTGGATTTAGAATGAAGCTAATTGGGCTAACCGAAGTGGCTGAAGCTCACTTTAGGAATCTGGTTAGAGATCTGGAGAATGGGTTGGAAGAGGTGAAAACAGGTGAGGGTTGGAAGACGAAGACGGAGATAGAGACGGATACTAAAGCTTATTGGGTTTGTGGTTTCTGTTCATTCACCAATCAAGGGTCTTCCATGAACTGCCACATTTGCGGCCAGCTGAGGGAGGATTCGTCAAGTAGAAGAAGCTATGGTGGATTCGTAATTTAG 1671 41.17 MFHSLHNDDETETDSDHSFMVEENHINDFYQTSSPPSLDYSILTQSELRKLQNEQITTVSSVLSLTEAAAILLLCHRNWNVSKVNDVWFSDEAKVRKFVGLFENPVVVKTLNSDSRKLMLCGICLENCEVYDMCSVSCNHLFCRDCWKSYISISINDGGSSCLLLKCPYPSCGAAVDRDMIDEFGMKEERERFGSYLLRSFVEQSKRMKWCPSPGCEFVVEFCGGPGGGDFDVVCLCDNRFCWNCCWEIHRPVDCDTVKRWEMKNKSEAENTKWILANTKPCPKCKKPIEKNQGCNVMTCRSPCLFRFCWLCLHDISDHRSASCNGFVANAEEESEVEDKRENARIHLRKYTHYFERWENNRKSRHKAIKDLELVKTDKMERLNQIQDHPISELRFLSEAWLQIIESRRVLQWSYAYGYYLPEEEKGKKQLFEYLQGQAELILERLHHCAEDEVLQFLSMSNPSESFIGFRMKLIGLTEVAEAHFRNLVRDLENGLEEVKTGEGWKTKTEIETDTKAYWVCGFCSFTNQGSSMNCHICGQLREDSSSRRSYGGFVI 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4477074 4478744 - evm.model.ptg000015l.689 HCH4g0689 542933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0689 556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 205 IPR013083 -
HCH4g0689 556 Pfam Ariadne domain 336 496 IPR045840 -
HCH4g0689 556 SUPERFAMILY RING/U-box 191 262 - -
HCH4g0689 556 SUPERFAMILY RING/U-box 116 200 - -
HCH4g0689 556 FunFam RBR-type E3 ubiquitin transferase 252 499 - -
HCH4g0689 556 Pfam IBR domain 277 315 - -
HCH4g0689 556 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 70 368 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
HCH4g0689 556 ProSiteProfiles TRIAD supradomain profile. 117 328 IPR044066 -
HCH4g0689 556 Pfam IBR domain, a half RING-finger domain 192 255 IPR002867 GO:0008270(InterPro)
HCH4g0689 556 ProSiteProfiles Zinc finger RING-type profile. 121 166 IPR001841 -
HCH4g0689 556 SUPERFAMILY RING/U-box 274 323 - -
HCH4g0689 556 Gene3D - 506 548 - -
HCH4g0689 556 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 51 89 IPR048962 -
HCH4g0689 556 CDD BRcat_RBR_ANKIB1 198 264 - -
HCH4g0689 556 Coils Coil 330 350 - -
HCH4g0689 556 ProSitePatterns Zinc finger RanBP2-type signature. 519 538 IPR001876 -
HCH4g0689 556 FunFam RBR-type E3 ubiquitin transferase 115 205 - -
HCH4g0689 556 SMART ibrneu5 259 324 IPR002867 GO:0008270(InterPro)
HCH4g0689 556 SMART ibrneu5 191 255 IPR002867 GO:0008270(InterPro)
HCH4g0689 556 ProSiteProfiles Zinc finger RanBP2 type profile. 515 544 IPR001876 -
HCH4g0689 556 Gene3D - 251 500 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0689 HCH-Chr4:4477074 HCH4g0690 HCH-Chr4:4484080 9.1e-312 tandem
HCH10g0037 HCH-Chr10:304267 HCH4g0689 HCH-Chr4:4477074 8.70E-143 transposed
HCH10g0595 HCH-Chr10:4806311 HCH4g0689 HCH-Chr4:4477074 1.30E-141 transposed
HCH2g0414 HCH-Chr2:47284062 HCH4g0689 HCH-Chr4:4477074 1.50E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0689 K11968 - mtr:25492643 528.094