Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0689 ATGTTTCATTCTCTCCACAATGATGACGAAACCGAAACCGATTCTGATCATTCATTCATGGTAGAAGAAAATCACATCAATGACTTCTATCAAACTTCCTCTCCGCCTTCGCTTGACTATTCCATTTTAACGCAATCAGAATTACGTAAACTTCAGAATGAACAAATCACAACGGTTTCTTCCGTTCTCTCTCTAACAGAAGCAGCAGCGATCCTCTTACTCTGTCACCGTAATTGGAACGTAAGTAAAGTTAATGATGTTTGGTTCTCTGATGAAGCTAAAGTTCGTAAATTTGTCGGGCTGTTTGAGAATCCGGTAGTCGTTAAAACCCTTAATTCAGATTCTCGAAAGTTGATGCTTTGTGGGATTTGCTTGGAAAATTGTGAAGTTTATGATATGTGTTCCGTTTCTTGTAATCACTTGTTTTGTAGAGATTGTTGGAAATCTTATATTAGTATTTCAATTAATGATGGGGGGTCTTCTTGTTTATTGCTTAAATGTCCTTATCCTTCTTGTGGGGCTGCTGTGGATAGGGATATGATTGATGAATTTGGTATGAAAGAAGAGAGAGAGAGATTTGGGAGTTATCTTTTGAGGTCGTTTGTGGAACAGAGTAAGAGAATGAAGTGGTGTCCATCTCCTGGATGTGAGTTTGTAGTTGAGTTTTGTGGTGGTCCTGGTGGAGGTGATTTTGATGTTGTTTGCTTATGTGATAATCGGTTTTGCTGGAATTGTTGTTGGGAAATTCATCGGCCAGTGGATTGCGATACGGTCAAAAGGTGGGAAATGAAGAACAAGAGTGAAGCTGAAAACACAAAATGGATACTGGCTAATACAAAGCCTTGTCCTAAATGTAAGAAACCAATTGAGAAGAATCAAGGTTGTAATGTGATGACATGTCGGTCCCCGTGTCTGTTTCGGTTCTGCTGGCTCTGTCTTCACGACATATCGGATCATCGATCGGCTTCTTGTAATGGATTTGTGGCCAATGCAGAGGAAGAGAGTGAGGTGGAGGACAAAAGAGAAAATGCCAGGATACATTTGAGGAAATACACACATTACTTTGAACGCTGGGAAAATAATCGAAAGTCGAGGCACAAAGCCATCAAAGATTTAGAATTGGTGAAAACGGATAAGATGGAGAGACTTAACCAGATTCAGGACCACCCCATTTCCGAGCTGCGGTTCTTGAGTGAGGCTTGGTTACAAATAATTGAAAGTAGGAGAGTTCTTCAATGGAGCTATGCTTATGGATACTATCTCCCAGAGGAGGAGAAGGGGAAAAAGCAACTTTTTGAGTACTTACAAGGACAGGCCGAATTGATTCTTGAAAGGCTTCATCATTGTGCAGAAGATGAGGTTTTACAGTTCCTCAGTATGAGTAATCCATCGGAGAGTTTCATTGGATTTAGAATGAAGCTAATTGGGCTAACCGAAGTGGCTGAAGCTCACTTTAGGAATCTGGTTAGAGATCTGGAGAATGGGTTGGAAGAGGTGAAAACAGGTGAGGGTTGGAAGACGAAGACGGAGATAGAGACGGATACTAAAGCTTATTGGGTTTGTGGTTTCTGTTCATTCACCAATCAAGGGTCTTCCATGAACTGCCACATTTGCGGCCAGCTGAGGGAGGATTCGTCAAGTAGAAGAAGCTATGGTGGATTCGTAATTTAG 1671 41.17 MFHSLHNDDETETDSDHSFMVEENHINDFYQTSSPPSLDYSILTQSELRKLQNEQITTVSSVLSLTEAAAILLLCHRNWNVSKVNDVWFSDEAKVRKFVGLFENPVVVKTLNSDSRKLMLCGICLENCEVYDMCSVSCNHLFCRDCWKSYISISINDGGSSCLLLKCPYPSCGAAVDRDMIDEFGMKEERERFGSYLLRSFVEQSKRMKWCPSPGCEFVVEFCGGPGGGDFDVVCLCDNRFCWNCCWEIHRPVDCDTVKRWEMKNKSEAENTKWILANTKPCPKCKKPIEKNQGCNVMTCRSPCLFRFCWLCLHDISDHRSASCNGFVANAEEESEVEDKRENARIHLRKYTHYFERWENNRKSRHKAIKDLELVKTDKMERLNQIQDHPISELRFLSEAWLQIIESRRVLQWSYAYGYYLPEEEKGKKQLFEYLQGQAELILERLHHCAEDEVLQFLSMSNPSESFIGFRMKLIGLTEVAEAHFRNLVRDLENGLEEVKTGEGWKTKTEIETDTKAYWVCGFCSFTNQGSSMNCHICGQLREDSSSRRSYGGFVI 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4477074 4478744 - evm.model.ptg000015l.689 HCH4g0689 542933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0689 556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 205 IPR013083 -
HCH4g0689 556 Pfam Ariadne domain 336 496 IPR045840 -
HCH4g0689 556 SUPERFAMILY RING/U-box 191 262 - -
HCH4g0689 556 SUPERFAMILY RING/U-box 116 200 - -
HCH4g0689 556 FunFam RBR-type E3 ubiquitin transferase 252 499 - -
HCH4g0689 556 Pfam IBR domain 277 315 - -
HCH4g0689 556 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 70 368 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
HCH4g0689 556 ProSiteProfiles TRIAD supradomain profile. 117 328 IPR044066 -
HCH4g0689 556 Pfam IBR domain, a half RING-finger domain 192 255 IPR002867 GO:0008270(InterPro)
HCH4g0689 556 ProSiteProfiles Zinc finger RING-type profile. 121 166 IPR001841 -
HCH4g0689 556 SUPERFAMILY RING/U-box 274 323 - -
HCH4g0689 556 Gene3D - 506 548 - -
HCH4g0689 556 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 51 89 IPR048962 -
HCH4g0689 556 CDD BRcat_RBR_ANKIB1 198 264 - -
HCH4g0689 556 Coils Coil 330 350 - -
HCH4g0689 556 ProSitePatterns Zinc finger RanBP2-type signature. 519 538 IPR001876 -
HCH4g0689 556 FunFam RBR-type E3 ubiquitin transferase 115 205 - -
HCH4g0689 556 SMART ibrneu5 259 324 IPR002867 GO:0008270(InterPro)
HCH4g0689 556 SMART ibrneu5 191 255 IPR002867 GO:0008270(InterPro)
HCH4g0689 556 ProSiteProfiles Zinc finger RanBP2 type profile. 515 544 IPR001876 -
HCH4g0689 556 Gene3D - 251 500 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0689 K11968 - - mtr:25492643 528.094
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0689 HCH-Chr4:4477074 HCH4g0690 HCH-Chr4:4484080 9.1e-312 tandem
HCH10g0037 HCH-Chr10:304267 HCH4g0689 HCH-Chr4:4477074 8.70E-143 transposed
HCH10g0595 HCH-Chr10:4806311 HCH4g0689 HCH-Chr4:4477074 1.30E-141 transposed
HCH2g0414 HCH-Chr2:47284062 HCH4g0689 HCH-Chr4:4477074 1.50E-49 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g0414 . 164 595 ARIADNE family AT4G34370 71.1 2.6e-181 631.7
HCH2g0414 . 58 542 ARIADNE family AT2G16090 76.4 6.5e-221 763.5
HCH2g0414 . 36 543 ARIADNE family AT3G27710 61.7 2.7e-183 638.6
HCH2g0414 . 44 523 ARIADNE family AT3G27720 53.3 8.0e-142 500.7
HCH10g0595 . 14 541 ARIADNE family AT1G05890 65.1 8.5e-223 770.0
HCH10g0037 . 64 543 ARIADNE family AT1G05890 72.5 9.1e-217 750.0
HCH4g0690 . 39 497 ARIADNE family AT1G05890 51.2 8.2e-141 497.7
HCH4g0689 . 39 499 ARIADNE family AT1G05890 51.7 1.4e-140 496.9
HCH10g0595 . 20 596 ARIADNE family AT1G65430 73.5 4.3e-264 907.1
HCH10g0037 . 16 593 ARIADNE family AT1G65430 69.4 7.6e-245 843.2
HCH10g0595 . 50 460 ARIADNE family AT2G31780 56.9 8.8e-148 520.4
HCH10g0037 . 51 457 ARIADNE family AT2G31780 56.7 1.5e-144 509.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030363 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2