Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0690 ATGTTTCATTCTCTCCACAATGATGACGAAACGGAAACCGATTCTGATCATTCATTCATCGTAGAAGAAAATCACATCAATGACTTCTATCAAACTTCCTCTCCGCCTTCTCTTCACTATTCCATTTTAACTCAATCAGAGTTACGTAAACTTCAGAATGAACAAATCACAACGGTTTCTTCCGTTCTCTCTTTAACAGAAGCAGCAGCGATCCTCTTACTCTGTCACCATAATTGGAACGTAAGTAAAGTTAATGATGTTTGGTTTTCTGATGACGCTAAAGTTCGTAAACTTATCGGGTTGTTTGAGAATCCGGTCGTCGTTAAAACCCTTAATTCAGATTCTCGAAATTTGATGCTTTGTGGGATTTGCTTGGAAAATTGTGAAGTTTATGATATGTGTGCTGTTTCTTGTAATCACTTGTTTTGTAGAGATTGTTGGAAATCTTATATTAGTAATTCAATTAATGATGGGGGGTCTTCTTGTTTATTTCTTAAATGTCCTCATCCTGCTTGTGGGGCTGCTGTGGATAGGGATATGATTGATGAATTTGGTATCAATGAAGAGAGAGAGAAATTTGGGAGTTATCTTTTGATGTCGTTTGTGGAAGAGAGTAAGAGAATGAAGTGGTGTCCATCTCCTGGATGTGAGTTTGTTGTTGAGTTTTGCGGTGGAGGTGATTTTGATGTTGTTTGCTTATGTGATAATCGGTTTTGCTGGAATTGTTGCTGGGAAATTCACCGGCCAGTGGATTGCGATACGGTCGAAAAGTGGGGAATGAAGAACAAGAGTGAAGCTGAAAACACAAAATGGATACTGGCTCATACAAAGCCTTGCCCTAAATGCAAGAAACCAATTGAGAAGAATCAAGGTTGTAATGTGATGACATGTCGGTCCCCGTGTCTGTTTCAGTTCTGCTGGCTCTGTCTTCATGGCATATCGGATCATCGTTCCGCTTCTTGTAATGGATTCGTGGCCAATTCAGGGGAAGAGAGTGAGGTGGAGGACAAAAGAGAAAATGCCAGGATACATTTGAGGAAATACACACATTACTTTGAACGCTGGGAAAATAATCGAAAGTCGAGGCACAAAGCCATCAAAGATTTAGAATTGGTGAAAACGGATAAGATGGAGAGACTTAACCAGATTCAGGACCACCCCATTTCCGAGCTGCGGTTCTTGAGTGAGGCTTGGTTACAAATAATTGAAAGTAGGAGAGTTCTTCAATGGAGCTATGCTTATGGATACTATCTCCCAGAGGAGGAGAAGGGGAAAAAGCAACTTTTTGAGTACTTACAAGGACAGGCCGAATTGATTCTTGAAAGGCTTCATCATTGTGCAGAAGATGAGGTGTTAAAGTTCCTCAGTATGAGGAAGCCATCGGAGAGTTTCATTGGATTTAGAATGAAGCTAATTGGGCTAACCAAAGTGGCTGAAACTCACTTTAGGAATCTGGTTAGAGCTCTGGAGAATGGGTTGGAAGAGGTGGAAACAGGTGAAGGTTGGAACACGGAGATGGAGACGGAGACGGAGACAGAAGCTGATTGGCTTTGTGGTTTCTGTGCATCCGCCAATCAAGGGTCTTCCATGAACTGCTACATTTGCCGCCAGCTGAGGGAGGATTCGTCAAGTAGAAGAAGCTATGGTGGATTCATGATTTAG 1662 41.64 MFHSLHNDDETETDSDHSFIVEENHINDFYQTSSPPSLHYSILTQSELRKLQNEQITTVSSVLSLTEAAAILLLCHHNWNVSKVNDVWFSDDAKVRKLIGLFENPVVVKTLNSDSRNLMLCGICLENCEVYDMCAVSCNHLFCRDCWKSYISNSINDGGSSCLFLKCPHPACGAAVDRDMIDEFGINEEREKFGSYLLMSFVEESKRMKWCPSPGCEFVVEFCGGGDFDVVCLCDNRFCWNCCWEIHRPVDCDTVEKWGMKNKSEAENTKWILAHTKPCPKCKKPIEKNQGCNVMTCRSPCLFQFCWLCLHGISDHRSASCNGFVANSGEESEVEDKRENARIHLRKYTHYFERWENNRKSRHKAIKDLELVKTDKMERLNQIQDHPISELRFLSEAWLQIIESRRVLQWSYAYGYYLPEEEKGKKQLFEYLQGQAELILERLHHCAEDEVLKFLSMRKPSESFIGFRMKLIGLTKVAETHFRNLVRALENGLEEVETGEGWNTEMETETETEADWLCGFCASANQGSSMNCYICRQLREDSSSRRSYGGFMI 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4484080 4485741 - evm.model.ptg000015l.690 HCH4g0690 542934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0690 553 SUPERFAMILY RING/U-box 191 259 - -
HCH4g0690 553 ProSiteProfiles TRIAD supradomain profile. 117 325 IPR044066 -
HCH4g0690 553 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 51 89 IPR048962 -
HCH4g0690 553 ProSitePatterns Zinc finger RanBP2-type signature. 516 535 IPR001876 -
HCH4g0690 553 Pfam IBR domain 274 311 - -
HCH4g0690 553 SUPERFAMILY RING/U-box 116 200 - -
HCH4g0690 553 SUPERFAMILY RING/U-box 271 320 - -
HCH4g0690 553 SMART ibrneu5 191 252 IPR002867 GO:0008270(InterPro)
HCH4g0690 553 SMART ibrneu5 256 321 IPR002867 GO:0008270(InterPro)
HCH4g0690 553 FunFam RBR-type E3 ubiquitin transferase 249 496 - -
HCH4g0690 553 CDD BRcat_RBR_ANKIB1 200 258 - -
HCH4g0690 553 Gene3D - 248 497 - -
HCH4g0690 553 ProSiteProfiles Zinc finger RanBP2 type profile. 512 541 IPR001876 -
HCH4g0690 553 Pfam Ariadne domain 333 493 IPR045840 -
HCH4g0690 553 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 GO:0008270(InterPro)
HCH4g0690 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 205 IPR013083 -
HCH4g0690 553 ProSiteProfiles Zinc finger RING-type profile. 121 168 IPR001841 -
HCH4g0690 553 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 62 365 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
HCH4g0690 553 FunFam RBR-type E3 ubiquitin transferase 115 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0595 HCH-Chr10:4806311 HCH4g0690 HCH-Chr4:4484080 6.90E-140 dispersed
HCH2g0414 HCH-Chr2:47284062 HCH4g0690 HCH-Chr4:4484080 9.20E-52 dispersed
HCH4g0689 HCH-Chr4:4477074 HCH4g0690 HCH-Chr4:4484080 9.1e-312 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0690 K11968 - mtr:25492643 534.643