Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0690 ATGTTTCATTCTCTCCACAATGATGACGAAACGGAAACCGATTCTGATCATTCATTCATCGTAGAAGAAAATCACATCAATGACTTCTATCAAACTTCCTCTCCGCCTTCTCTTCACTATTCCATTTTAACTCAATCAGAGTTACGTAAACTTCAGAATGAACAAATCACAACGGTTTCTTCCGTTCTCTCTTTAACAGAAGCAGCAGCGATCCTCTTACTCTGTCACCATAATTGGAACGTAAGTAAAGTTAATGATGTTTGGTTTTCTGATGACGCTAAAGTTCGTAAACTTATCGGGTTGTTTGAGAATCCGGTCGTCGTTAAAACCCTTAATTCAGATTCTCGAAATTTGATGCTTTGTGGGATTTGCTTGGAAAATTGTGAAGTTTATGATATGTGTGCTGTTTCTTGTAATCACTTGTTTTGTAGAGATTGTTGGAAATCTTATATTAGTAATTCAATTAATGATGGGGGGTCTTCTTGTTTATTTCTTAAATGTCCTCATCCTGCTTGTGGGGCTGCTGTGGATAGGGATATGATTGATGAATTTGGTATCAATGAAGAGAGAGAGAAATTTGGGAGTTATCTTTTGATGTCGTTTGTGGAAGAGAGTAAGAGAATGAAGTGGTGTCCATCTCCTGGATGTGAGTTTGTTGTTGAGTTTTGCGGTGGAGGTGATTTTGATGTTGTTTGCTTATGTGATAATCGGTTTTGCTGGAATTGTTGCTGGGAAATTCACCGGCCAGTGGATTGCGATACGGTCGAAAAGTGGGGAATGAAGAACAAGAGTGAAGCTGAAAACACAAAATGGATACTGGCTCATACAAAGCCTTGCCCTAAATGCAAGAAACCAATTGAGAAGAATCAAGGTTGTAATGTGATGACATGTCGGTCCCCGTGTCTGTTTCAGTTCTGCTGGCTCTGTCTTCATGGCATATCGGATCATCGTTCCGCTTCTTGTAATGGATTCGTGGCCAATTCAGGGGAAGAGAGTGAGGTGGAGGACAAAAGAGAAAATGCCAGGATACATTTGAGGAAATACACACATTACTTTGAACGCTGGGAAAATAATCGAAAGTCGAGGCACAAAGCCATCAAAGATTTAGAATTGGTGAAAACGGATAAGATGGAGAGACTTAACCAGATTCAGGACCACCCCATTTCCGAGCTGCGGTTCTTGAGTGAGGCTTGGTTACAAATAATTGAAAGTAGGAGAGTTCTTCAATGGAGCTATGCTTATGGATACTATCTCCCAGAGGAGGAGAAGGGGAAAAAGCAACTTTTTGAGTACTTACAAGGACAGGCCGAATTGATTCTTGAAAGGCTTCATCATTGTGCAGAAGATGAGGTGTTAAAGTTCCTCAGTATGAGGAAGCCATCGGAGAGTTTCATTGGATTTAGAATGAAGCTAATTGGGCTAACCAAAGTGGCTGAAACTCACTTTAGGAATCTGGTTAGAGCTCTGGAGAATGGGTTGGAAGAGGTGGAAACAGGTGAAGGTTGGAACACGGAGATGGAGACGGAGACGGAGACAGAAGCTGATTGGCTTTGTGGTTTCTGTGCATCCGCCAATCAAGGGTCTTCCATGAACTGCTACATTTGCCGCCAGCTGAGGGAGGATTCGTCAAGTAGAAGAAGCTATGGTGGATTCATGATTTAG 1662 41.64 MFHSLHNDDETETDSDHSFIVEENHINDFYQTSSPPSLHYSILTQSELRKLQNEQITTVSSVLSLTEAAAILLLCHHNWNVSKVNDVWFSDDAKVRKLIGLFENPVVVKTLNSDSRNLMLCGICLENCEVYDMCAVSCNHLFCRDCWKSYISNSINDGGSSCLFLKCPHPACGAAVDRDMIDEFGINEEREKFGSYLLMSFVEESKRMKWCPSPGCEFVVEFCGGGDFDVVCLCDNRFCWNCCWEIHRPVDCDTVEKWGMKNKSEAENTKWILAHTKPCPKCKKPIEKNQGCNVMTCRSPCLFQFCWLCLHGISDHRSASCNGFVANSGEESEVEDKRENARIHLRKYTHYFERWENNRKSRHKAIKDLELVKTDKMERLNQIQDHPISELRFLSEAWLQIIESRRVLQWSYAYGYYLPEEEKGKKQLFEYLQGQAELILERLHHCAEDEVLKFLSMRKPSESFIGFRMKLIGLTKVAETHFRNLVRALENGLEEVETGEGWNTEMETETETEADWLCGFCASANQGSSMNCYICRQLREDSSSRRSYGGFMI 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4484080 4485741 - evm.model.ptg000015l.690 HCH4g0690 542934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0690 553 SUPERFAMILY RING/U-box 191 259 - -
HCH4g0690 553 ProSiteProfiles TRIAD supradomain profile. 117 325 IPR044066 -
HCH4g0690 553 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 51 89 IPR048962 -
HCH4g0690 553 ProSitePatterns Zinc finger RanBP2-type signature. 516 535 IPR001876 -
HCH4g0690 553 Pfam IBR domain 274 311 - -
HCH4g0690 553 SUPERFAMILY RING/U-box 116 200 - -
HCH4g0690 553 SUPERFAMILY RING/U-box 271 320 - -
HCH4g0690 553 SMART ibrneu5 191 252 IPR002867 GO:0008270(InterPro)
HCH4g0690 553 SMART ibrneu5 256 321 IPR002867 GO:0008270(InterPro)
HCH4g0690 553 FunFam RBR-type E3 ubiquitin transferase 249 496 - -
HCH4g0690 553 CDD BRcat_RBR_ANKIB1 200 258 - -
HCH4g0690 553 Gene3D - 248 497 - -
HCH4g0690 553 ProSiteProfiles Zinc finger RanBP2 type profile. 512 541 IPR001876 -
HCH4g0690 553 Pfam Ariadne domain 333 493 IPR045840 -
HCH4g0690 553 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 GO:0008270(InterPro)
HCH4g0690 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 205 IPR013083 -
HCH4g0690 553 ProSiteProfiles Zinc finger RING-type profile. 121 168 IPR001841 -
HCH4g0690 553 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 62 365 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
HCH4g0690 553 FunFam RBR-type E3 ubiquitin transferase 115 205 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0690 K11968 - - mtr:25492643 534.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0595 HCH-Chr10:4806311 HCH4g0690 HCH-Chr4:4484080 6.90E-140 dispersed
HCH2g0414 HCH-Chr2:47284062 HCH4g0690 HCH-Chr4:4484080 9.20E-52 dispersed
HCH4g0689 HCH-Chr4:4477074 HCH4g0690 HCH-Chr4:4484080 9.1e-312 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g0414 . 164 595 ARIADNE family AT4G34370 71.1 2.6e-181 631.7
HCH2g0414 . 58 542 ARIADNE family AT2G16090 76.4 6.5e-221 763.5
HCH2g0414 . 36 543 ARIADNE family AT3G27710 61.7 2.7e-183 638.6
HCH2g0414 . 44 523 ARIADNE family AT3G27720 53.3 8.0e-142 500.7
HCH10g0595 . 14 541 ARIADNE family AT1G05890 65.1 8.5e-223 770.0
HCH10g0037 . 64 543 ARIADNE family AT1G05890 72.5 9.1e-217 750.0
HCH4g0690 . 39 497 ARIADNE family AT1G05890 51.2 8.2e-141 497.7
HCH4g0689 . 39 499 ARIADNE family AT1G05890 51.7 1.4e-140 496.9
HCH10g0595 . 20 596 ARIADNE family AT1G65430 73.5 4.3e-264 907.1
HCH10g0037 . 16 593 ARIADNE family AT1G65430 69.4 7.6e-245 843.2
HCH10g0595 . 50 460 ARIADNE family AT2G31780 56.9 8.8e-148 520.4
HCH10g0037 . 51 457 ARIADNE family AT2G31780 56.7 1.5e-144 509.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030363 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2