Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0696 ATGGAAAGCGGGTTTGGGGAATCGACAAGCCGGCCACCTCAAAGCCCGTCTTTTTCCAACAATAATAGTGATGCTGGTAACTTTGAGTGCAATATTTGCTTGGATTTAGCTCAAGATCCTATTGTAACCCTTTGTGGACATTTGTTCTGCTGGCCATGTCTTTATAAGTGGCTGCACATTCACTCGCATCCTCAGGAATGTCCGGTTTGCAAGGCGATTATCGAAGAACAGAAGTTGGTTCCTTTGTATGGCAGGGGAAAGACATCGACTGACCCGAGATCGAAATCCATTCCTGGAATGGATATTCCTAATCGTCCGGCTGGACAGAGACCTGAAACAGGTCCTCCACCTGATCCTAATCATTTTCCTCACAATGGATTTGGATTCATGGGAGGTTTGGGAGGGTTTGCCCCTATGGCTTCTGCGAGGTTTGGTAATTTCACATTGTCTGCGGCTTTTGGTGGCCTCGTCCCGTCTTTGTTTAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAGTTTTCCTTATGGGTTTTCTAATATGTTTCATGGTGGTCATGCTCATCCCCATGGATATTATCACCATCTCCGTCAAGGTCAACAAGATTATTATCTGAAGCGGCTGCTTTTGTTTATTGGTGTCTGTGTTCTTCTTGCTCTAATCTGGCAATAG 690 45.36 MESGFGESTSRPPQSPSFSNNNSDAGNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGMDIPNRPAGQRPETGPPPDPNHFPHNGFGFMGGLGGFAPMASARFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGASFPYGFSNMFHGGHAHPHGYYHHLRQGQQDYYLKRLLLFIGVCVLLALIWQ 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4518971 4519660 - evm.model.ptg000015l.696 HCH4g0696 542940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0696 229 SMART ring_2 30 70 IPR001841 -
HCH4g0696 229 MobiDBLite consensus disorder prediction 84 119 - -
HCH4g0696 229 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
HCH4g0696 229 SUPERFAMILY RING/U-box 27 83 - -
HCH4g0696 229 CDD RING-HC_AtRMA-like 28 72 - -
HCH4g0696 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 84 IPR013083 -
HCH4g0696 229 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
HCH4g0696 229 Pfam Zinc finger, C3HC4 type (RING finger) 30 70 IPR018957 GO:0046872(InterPro)
HCH4g0696 229 MobiDBLite consensus disorder prediction 1 20 - -
HCH4g0696 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 220 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1078 HCH-Chr12:8166454 HCH4g0696 HCH-Chr4:4518971 1.30E-26 dispersed
HCH2g0823 HCH-Chr2:51774507 HCH4g0696 HCH-Chr4:4518971 3.00E-25 dispersed
HCH3g0644 HCH-Chr3:4479380 HCH4g0696 HCH-Chr4:4518971 2.10E-23 dispersed
HCH4g0696 HCH-Chr4:4518971 HCH7g0154 HCH-Chr7:1042413 4.10E-24 dispersed
HCH11g0555 HCH-Chr11:7851893 HCH4g0696 HCH-Chr4:4518971 2.40E-25 transposed
HCH6g0325 HCH-Chr6:5038868 HCH4g0696 HCH-Chr4:4518971 3.20E-20 transposed
HCH14g0215 HCH-Chr14:29041364 HCH4g0696 HCH-Chr4:4518971 6.00E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0696 K10666 - csv:101221027 427.557