Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0706 ATGACGTCAGATGGGGCAACTTCTGCTTCCACTTGTCGGAGAAAGCCGTCGTGGAGGGAGAGAGAGAATAATCGAACCCGTGAGCGGCGGAGGAGAGCTATGGCTGCCAAAATTTACTCCGGTCTTAGGGCTCAGGGGAATTTTAATCTCCCTAAACACTGCGATAATAATGAGGTTCTTAAAGCTCTTTGTGCTGAAGCTGGTTGGACCGTTGAAGAAGACGGAACCACTTACCGGAAGGGATCTAGGCCACCCCCACTTGATATTGTAGGCAGTTCCACCAAAATCACTCCCTATTCTTCTCAGAATCCAAGTCCATTGTCTTCCTCATTCCCGAGCCCTATTGCTTCCTACCAAGTTAGCCCCTCATCGTCGTCTTTCCCGAGCCCGTCTCGTTTCGAGGCTAACAATCCATCAAATCTCATTCCGTATCTTCGTCAAGCGATTCCAATATCTCTTCCTCAGCTTCGAATCTCGAACAGTGCTCCTGTGACCCCTCCTCTTTCATCCCCAGCCTCAAGGACTCCCCAGTTAATGCATAACTGGGAGGTGACTGCTAAAGAATCGTTATCTTCCTTGAATTACCCTTTCTTTGCTGTATCTGCTCCGGCTAGCCCAACTCGTCATCAGCTGCATACTCCGGCCACAATCCATGAAGGTGATGAGTCTGAATCATCCACCAATGATTCTGGTCAATGGGGAATTCATCGAGCCTATGGGCCTTCTGCATCTACAGTGCCAACATCTCCTACTTTTAACCTTGTGAAACGTGCTAATCAGAATGTTCTGCACCATAATCTAATAGAAGAAAACGGAAGAGGAAATGAGTTTGAGTTCTTGGGATTATGCAAGGTTAAGCCATGGGAAGGGGAGAAGATCCACGAAGTCGGATTGGAAGATGATTTAGAGCTCACGCTTGGCAGCGGTAAGGCCTGA 936 48.18 MTSDGATSASTCRRKPSWRERENNRTRERRRRAMAAKIYSGLRAQGNFNLPKHCDNNEVLKALCAEAGWTVEEDGTTYRKGSRPPPLDIVGSSTKITPYSSQNPSPLSSSFPSPIASYQVSPSSSSFPSPSRFEANNPSNLIPYLRQAIPISLPQLRISNSAPVTPPLSSPASRTPQLMHNWEVTAKESLSSLNYPFFAVSAPASPTRHQLHTPATIHEGDESESSTNDSGQWGIHRAYGPSASTVPTSPTFNLVKRANQNVLHHNLIEENGRGNEFEFLGLCKVKPWEGEKIHEVGLEDDLELTLGSGKA 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4591031 4592297 + evm.model.ptg000015l.706 HCH4g0706 542950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0706 311 Pfam BES1/BZR1 plant transcription factor, N-terminal 13 135 IPR008540 -
HCH4g0706 311 MobiDBLite consensus disorder prediction 75 133 - -
HCH4g0706 311 MobiDBLite consensus disorder prediction 14 29 - -
HCH4g0706 311 MobiDBLite consensus disorder prediction 93 133 - -
HCH4g0706 311 MobiDBLite consensus disorder prediction 214 247 - -
HCH4g0706 311 MobiDBLite consensus disorder prediction 1 29 - -
HCH4g0706 311 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 12 310 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0706 HCH-Chr4:4591031 HCH6g0624 HCH-Chr6:37496919 8.00E-47 dispersed
HCH14g0542 HCH-Chr14:34338236 HCH4g0706 HCH-Chr4:4591031 2.20E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33466 PF05687 BES1_N 5.00E-60 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0706 K14503 - csv:101219853 476.863