Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0706 ATGACGTCAGATGGGGCAACTTCTGCTTCCACTTGTCGGAGAAAGCCGTCGTGGAGGGAGAGAGAGAATAATCGAACCCGTGAGCGGCGGAGGAGAGCTATGGCTGCCAAAATTTACTCCGGTCTTAGGGCTCAGGGGAATTTTAATCTCCCTAAACACTGCGATAATAATGAGGTTCTTAAAGCTCTTTGTGCTGAAGCTGGTTGGACCGTTGAAGAAGACGGAACCACTTACCGGAAGGGATCTAGGCCACCCCCACTTGATATTGTAGGCAGTTCCACCAAAATCACTCCCTATTCTTCTCAGAATCCAAGTCCATTGTCTTCCTCATTCCCGAGCCCTATTGCTTCCTACCAAGTTAGCCCCTCATCGTCGTCTTTCCCGAGCCCGTCTCGTTTCGAGGCTAACAATCCATCAAATCTCATTCCGTATCTTCGTCAAGCGATTCCAATATCTCTTCCTCAGCTTCGAATCTCGAACAGTGCTCCTGTGACCCCTCCTCTTTCATCCCCAGCCTCAAGGACTCCCCAGTTAATGCATAACTGGGAGGTGACTGCTAAAGAATCGTTATCTTCCTTGAATTACCCTTTCTTTGCTGTATCTGCTCCGGCTAGCCCAACTCGTCATCAGCTGCATACTCCGGCCACAATCCATGAAGGTGATGAGTCTGAATCATCCACCAATGATTCTGGTCAATGGGGAATTCATCGAGCCTATGGGCCTTCTGCATCTACAGTGCCAACATCTCCTACTTTTAACCTTGTGAAACGTGCTAATCAGAATGTTCTGCACCATAATCTAATAGAAGAAAACGGAAGAGGAAATGAGTTTGAGTTCTTGGGATTATGCAAGGTTAAGCCATGGGAAGGGGAGAAGATCCACGAAGTCGGATTGGAAGATGATTTAGAGCTCACGCTTGGCAGCGGTAAGGCCTGA 936 48.18 MTSDGATSASTCRRKPSWRERENNRTRERRRRAMAAKIYSGLRAQGNFNLPKHCDNNEVLKALCAEAGWTVEEDGTTYRKGSRPPPLDIVGSSTKITPYSSQNPSPLSSSFPSPIASYQVSPSSSSFPSPSRFEANNPSNLIPYLRQAIPISLPQLRISNSAPVTPPLSSPASRTPQLMHNWEVTAKESLSSLNYPFFAVSAPASPTRHQLHTPATIHEGDESESSTNDSGQWGIHRAYGPSASTVPTSPTFNLVKRANQNVLHHNLIEENGRGNEFEFLGLCKVKPWEGEKIHEVGLEDDLELTLGSGKA 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4591031 4592297 + evm.model.ptg000015l.706 HCH4g0706 542950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0706 311 Pfam BES1/BZR1 plant transcription factor, N-terminal 13 135 IPR008540 -
HCH4g0706 311 MobiDBLite consensus disorder prediction 75 133 - -
HCH4g0706 311 MobiDBLite consensus disorder prediction 14 29 - -
HCH4g0706 311 MobiDBLite consensus disorder prediction 93 133 - -
HCH4g0706 311 MobiDBLite consensus disorder prediction 214 247 - -
HCH4g0706 311 MobiDBLite consensus disorder prediction 1 29 - -
HCH4g0706 311 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 12 310 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0706 K14503 - - csv:101219853 476.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0706 HCH-Chr4:4591031 HCH6g0624 HCH-Chr6:37496919 8.00E-47 dispersed
HCH14g0542 HCH-Chr14:34338236 HCH4g0706 HCH-Chr4:4591031 2.20E-76 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g0706 . 1 311 BZR Transcription Factor Family AT1G75080 59.2 8.3e-82 300.8
HCH14g0542 . 28 316 BZR Transcription Factor Family AT1G75080 58.2 1.1e-78 290.4
HCH4g0706 . 1 311 BZR Transcription Factor Family AT1G19350 57.9 3.5e-80 295.4
HCH14g0542 . 28 312 BZR Transcription Factor Family AT1G19350 58.3 8.8e-76 280.8
HCH14g0542 . 2 313 BZR Transcription Factor Family AT3G50750 60.6 8.6e-77 283.9
HCH4g0706 . 1 307 BZR Transcription Factor Family AT3G50750 51.3 4.3e-60 228.4
HCH3g0734 . 80 326 BZR Transcription Factor Family AT4G18890 53.2 5.5e-52 201.1
HCH6g0624 . 77 325 BZR Transcription Factor Family AT4G18890 53.4 5.7e-49 191.0
HCH6g0624 . 1 325 BZR Transcription Factor Family AT1G78700 72.8 6.5e-116 414.1
HCH3g0734 . 1 326 BZR Transcription Factor Family AT1G78700 70.0 4.5e-109 391.3
HCH14g0542 . 28 200 BZR Transcription Factor Family AT4G36780 76.8 1.2e-59 226.9
HCH4g0706 . 33 204 BZR Transcription Factor Family AT4G36780 57.1 5.2e-39 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007707 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33466 PF05687 BES1_N 5.00E-60 No_clan HCH TF