Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0729 ATGGATATAAGAGACCAAGACAAAGAGGTTATAATACCTCCTGCTTCTGGCGGCGGTAGCGGCGGCGGTGGAGGATATGGTCATATCTTCGGTGAAACGTCGTCCGGCGTGGTTGATAGGAGAGTAGAATCAATTCATAACGGTTCTCATCATAACCACCTTGATGGCGACCGTGTAACGGCTCCGGCGGAGAATGTCGGCGCCGCCTCTAGTTTTCCGGCGGGGAGATCTAAGATGAGGCCGGTTTCTGGCATCCGATATCGAGAATGTTTAAAGAATCACGCTGCGAGCGTTGGCGGAAACATATACGACGGATGCGGGGAGTTCATGCCGAGCGGCGACGACGGAACCCTAGAAGCTTTGAAATGTGCTGCTTGTGATTGTCACCGGAACTTTCACCGTAAAGAAATCGATGGCGAGACTCAATTGAATGTCAGCCCTAATTATAGAAGAGGGTTATTGCTTAATCATCTTCAGCTTCCCCCACCATTGCCATCACCATCAGCTATTCATCATGGTCACCATAAATTCTCTATGGCATTGAATCTCCATTCTAGCCCTAGCGCTCCGATTATCGCACCGATGAATGTCGCTTTCGCTAGCGGAGGAAATGAGTCTTCAAGTGAAGATTTGAATGTATTTCAGTCCAATGCTGAGGCTATGCCACCGTCATCGTTTTCGTTGTCGAAGAAGCGGTTTCGGACTAAGTTTACGATGGAGCAAAAGGATAGAATGCTTGAATTTGCTGAGAAAGTTGGATGGAGGATTCAGAAGCAAGATGAAGAGGAAGTAGAGAGACTCTGCAGTGAAGTAGGAGTGAAACGGCAAGTTCTCAAAGTATGGATGCATAATAACAAGAACTCGATGAAGAAGCCGAGCGACGGACACGATCCGGAGATAGCAGGCACTGGCGCGGGCGATGGTGGGATTAATGATTCGTAA 942 48.41 MDIRDQDKEVIIPPASGGGSGGGGGYGHIFGETSSGVVDRRVESIHNGSHHNHLDGDRVTAPAENVGAASSFPAGRSKMRPVSGIRYRECLKNHAASVGGNIYDGCGEFMPSGDDGTLEALKCAACDCHRNFHRKEIDGETQLNVSPNYRRGLLLNHLQLPPPLPSPSAIHHGHHKFSMALNLHSSPSAPIIAPMNVAFASGGNESSSEDLNVFQSNAEAMPPSSFSLSKKRFRTKFTMEQKDRMLEFAEKVGWRIQKQDEEEVERLCSEVGVKRQVLKVWMHNNKNSMKKPSDGHDPEIAGTGAGDGGINDS 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4696492 4697433 + evm.model.ptg000015l.729 HCH4g0729 542973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0729 313 ProSiteProfiles 'Homeobox' domain profile. 228 292 IPR001356 GO:0003677(InterPro)
HCH4g0729 313 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 86 137 IPR006456 -
HCH4g0729 313 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 70 288 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
HCH4g0729 313 FunFam Zinc-finger homeodomain protein 2 217 291 - -
HCH4g0729 313 SUPERFAMILY Homeodomain-like 225 291 IPR009057 -
HCH4g0729 313 Pfam ZF-HD protein dimerisation region 85 137 IPR006456 -
HCH4g0729 313 MobiDBLite consensus disorder prediction 284 313 - -
HCH4g0729 313 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 87 136 IPR006456 -
HCH4g0729 313 NCBIfam homeobox domain, ZF-HD class 230 287 IPR006455 -
HCH4g0729 313 Gene3D - 216 291 - -
HCH4g0729 313 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0254 HCH-Chr4:1570917 HCH4g0729 HCH-Chr4:4696492 1.70E-46 dispersed
HCH4g0729 HCH-Chr4:4696492 HCH9g0225 HCH-Chr9:1329224 1.00E-33 dispersed
HCH1g0163 HCH-Chr1:12945090 HCH4g0729 HCH-Chr4:4696492 3.50E-45 transposed
HCH14g0573 HCH-Chr14:34602936 HCH4g0729 HCH-Chr4:4696492 5.40E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33469 PF04770 ZF-HD_dimer 8.10E-30 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0729 - - - 0.0