Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0729 ATGGATATAAGAGACCAAGACAAAGAGGTTATAATACCTCCTGCTTCTGGCGGCGGTAGCGGCGGCGGTGGAGGATATGGTCATATCTTCGGTGAAACGTCGTCCGGCGTGGTTGATAGGAGAGTAGAATCAATTCATAACGGTTCTCATCATAACCACCTTGATGGCGACCGTGTAACGGCTCCGGCGGAGAATGTCGGCGCCGCCTCTAGTTTTCCGGCGGGGAGATCTAAGATGAGGCCGGTTTCTGGCATCCGATATCGAGAATGTTTAAAGAATCACGCTGCGAGCGTTGGCGGAAACATATACGACGGATGCGGGGAGTTCATGCCGAGCGGCGACGACGGAACCCTAGAAGCTTTGAAATGTGCTGCTTGTGATTGTCACCGGAACTTTCACCGTAAAGAAATCGATGGCGAGACTCAATTGAATGTCAGCCCTAATTATAGAAGAGGGTTATTGCTTAATCATCTTCAGCTTCCCCCACCATTGCCATCACCATCAGCTATTCATCATGGTCACCATAAATTCTCTATGGCATTGAATCTCCATTCTAGCCCTAGCGCTCCGATTATCGCACCGATGAATGTCGCTTTCGCTAGCGGAGGAAATGAGTCTTCAAGTGAAGATTTGAATGTATTTCAGTCCAATGCTGAGGCTATGCCACCGTCATCGTTTTCGTTGTCGAAGAAGCGGTTTCGGACTAAGTTTACGATGGAGCAAAAGGATAGAATGCTTGAATTTGCTGAGAAAGTTGGATGGAGGATTCAGAAGCAAGATGAAGAGGAAGTAGAGAGACTCTGCAGTGAAGTAGGAGTGAAACGGCAAGTTCTCAAAGTATGGATGCATAATAACAAGAACTCGATGAAGAAGCCGAGCGACGGACACGATCCGGAGATAGCAGGCACTGGCGCGGGCGATGGTGGGATTAATGATTCGTAA 942 48.41 MDIRDQDKEVIIPPASGGGSGGGGGYGHIFGETSSGVVDRRVESIHNGSHHNHLDGDRVTAPAENVGAASSFPAGRSKMRPVSGIRYRECLKNHAASVGGNIYDGCGEFMPSGDDGTLEALKCAACDCHRNFHRKEIDGETQLNVSPNYRRGLLLNHLQLPPPLPSPSAIHHGHHKFSMALNLHSSPSAPIIAPMNVAFASGGNESSSEDLNVFQSNAEAMPPSSFSLSKKRFRTKFTMEQKDRMLEFAEKVGWRIQKQDEEEVERLCSEVGVKRQVLKVWMHNNKNSMKKPSDGHDPEIAGTGAGDGGINDS 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4696492 4697433 + evm.model.ptg000015l.729 HCH4g0729 542973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0729 313 ProSiteProfiles 'Homeobox' domain profile. 228 292 IPR001356 GO:0003677(InterPro)
HCH4g0729 313 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 86 137 IPR006456 -
HCH4g0729 313 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 70 288 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
HCH4g0729 313 FunFam Zinc-finger homeodomain protein 2 217 291 - -
HCH4g0729 313 SUPERFAMILY Homeodomain-like 225 291 IPR009057 -
HCH4g0729 313 Pfam ZF-HD protein dimerisation region 85 137 IPR006456 -
HCH4g0729 313 MobiDBLite consensus disorder prediction 284 313 - -
HCH4g0729 313 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 87 136 IPR006456 -
HCH4g0729 313 NCBIfam homeobox domain, ZF-HD class 230 287 IPR006455 -
HCH4g0729 313 Gene3D - 216 291 - -
HCH4g0729 313 MobiDBLite consensus disorder prediction 1 25 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0729 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0254 HCH-Chr4:1570917 HCH4g0729 HCH-Chr4:4696492 1.70E-46 dispersed
HCH4g0729 HCH-Chr4:4696492 HCH9g0225 HCH-Chr9:1329224 1.00E-33 dispersed
HCH1g0163 HCH-Chr1:12945090 HCH4g0729 HCH-Chr4:4696492 3.50E-45 transposed
HCH14g0573 HCH-Chr14:34602936 HCH4g0729 HCH-Chr4:4696492 5.40E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0459 . 45 235 ZF-HD Transcription Factor Family AT5G65410 51.5 4.2e-47 185.3
HCH4g0254 . 5 230 ZF-HD Transcription Factor Family AT4G24660 54.2 7.5e-58 220.7
HCH4g0729 . 85 289 ZF-HD Transcription Factor Family AT4G24660 50.7 7.8e-47 184.1
HCH13g0736 . 3 267 ZF-HD Transcription Factor Family AT5G15210 52.5 1.2e-49 193.7
HCH9g0225 . 7 260 ZF-HD Transcription Factor Family AT5G15210 52.8 1.6e-46 183.3
HCH9g0225 . 1 263 ZF-HD Transcription Factor Family AT3G28920 66.3 3.2e-64 242.3
HCH13g0736 . 14 269 ZF-HD Transcription Factor Family AT3G28920 57.0 1.6e-55 213.4
HCH9g0225 . 22 270 ZF-HD Transcription Factor Family AT5G39760 63.2 7.3e-54 208.0
HCH13g0736 . 22 273 ZF-HD Transcription Factor Family AT5G39760 54.2 1.6e-48 190.3
HCH4g0254 . 5 230 ZF-HD Transcription Factor Family AT4G24660 54.2 7.5e-58 220.7
HCH4g0729 . 85 289 ZF-HD Transcription Factor Family AT4G24660 50.7 7.8e-47 184.1
HCH9g0225 . 22 270 ZF-HD Transcription Factor Family AT5G39760 63.2 7.3e-54 208.0
HCH13g0736 . 22 273 ZF-HD Transcription Factor Family AT5G39760 54.2 1.6e-48 190.3
HCH14g0459 . 45 235 ZF-HD Transcription Factor Family AT5G65410 51.5 4.2e-47 185.3
HCH13g0736 . 3 267 ZF-HD Transcription Factor Family AT5G15210 52.5 1.2e-49 193.7
HCH9g0225 . 7 260 ZF-HD Transcription Factor Family AT5G15210 52.8 1.6e-46 183.3
HCH9g0225 . 1 263 ZF-HD Transcription Factor Family AT3G28920 66.3 3.2e-64 242.3
HCH13g0736 . 14 269 ZF-HD Transcription Factor Family AT3G28920 57.0 1.6e-55 213.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005524 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33469 PF04770 ZF-HD_dimer 8.10E-30 No_clan HCH TF