Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0735 ATGACGTCTTTTGTGAAACCTGAGAATGCTCTCAAACGAGCTGAAGAGTTGATCAATGTTGGTCAGAAGCAAGATGCCTTGCAGGCCCTTCATGATCTTATCACTTCAAAGAGATATCGAGCATGGCAAAAACCTTTGGAGAGGATTATGTTCAAGTACGTGGAGCTATGTGTGGACATGAGGAAAGGAAGGTTTGCAAAGGATGGTTTGATTCAATATCGTATCGTTTGCCAGCAAGTCAATGTCAATTCTCTAGAGGAGGTTATCAAGCACTTTATGCATCTTTCAACTGAGAAAGCCGAGCAGGCTCGTAGTCAGGCTCAAGCCCTAGAAGAAGCACTTGACGTGGATGACTTGGAAGCTGATAAAAGGCCAGAAGATCTGATGCTCAGTTATGTCAGTGGAGAAAAGGGAAAGGATCGATCTGATCGTGAACTTGTTACTCCTTGGTTTAAGTTTTTATGGGAGACATATAGAACCGTTCTTGAGATACTGAGGAATAACTCAAAGTTGGAGGCCCTTTATGCAATGACAGCTCATCGTGCCTTCCAGTTTTGTAAGTTGTATAAAAGATCAACAGAGTTTCGCAGGTTGTGTGAAATTATCAGAAATCACCTTGCTAATCTCAACAAGTATAGAGACCAAAGAGACAGGCCTGACCTATCAGCTCCAGAAAGCTTGCAATTGTACCTTGACACAAGATTTGAACAGCTAAAGGTTGCCACAGAACTGGAACTCTGGCAGGAAGCTTTTCGTTCTGTTGAAGATATTCATGGTTTGATGTGCATGGTTAAGAAAACACCTAAACCGTCCTTGATGGTGGTTTATTATGTCAAATTGACAGAGATATTCTGGATATCAGACAGTCGTCTTTATCATGCTTATGCATGGCTTAAACTTTTTACTCTTCAGAAAAGTTTCAACAAAAATCTAAGCCAGAAGGACTTGCAGCTTATAGCATCATCTGTTGTTTTAGCAGCACTTTCAGTGCCTCCATATGACAATAAGCATGGTGCTTCACATCTAGAACTTGAAAATGAGAAAGAGCGGAATTTGAGGATGGGTAATCTTTTAGGATTCAATCTAGACTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGGGCGAATCTTCTTTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGTGCAACTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTCTTCCCTCTTGATCTTGCATTAAAACTACAACCCTTGCTTAACAAAATCTCAAAGCTGGGTGGTAAGCTTTCATCAGCTTCATCCGTCCCAGAAGTGCAATTATCCCAGTATGTTCCAGCGCTTGAAAAACTTGCTACTCTGAGGTTGCTTCAGCAGATCTCCCAGGTGTATCAGACTATGAAAATTGAGAGTCTATCCCAGATGATCCCATTTTTTGATTTTTCTCTCGTGGAGAAAGTATCTGTGGATGCAGTTAAACAAAATTTCATAGCAATGAAAGTTGATCATTCAAGGGGTGTTGTGTTATTTGGCAATTTGGGTATTGAATCGGATAGGCTTCGGGATCACCTGACTGTTCTTGCTGAATCCTTAAACAAAGCAAGAGGCATGATCTATCCTCCAGTTAAGAAAGCATCAAAAACAAGTGAAATATTGCCTGACTTGGCAGATGTCATTGATAAAGAGCACAAGAGACTTCTTGCTCGGAAATCTATAATAGAGAAAAGGAAGGAAGAACAGGAACGTCAACTTTTGGAAATGGAACGTGAGGAGGAGTCAAAAAGGTTAAAATTACTGAAGATAACCGAAGAGGCTGAGCAGAAGCGACTAGCTACAGAATATGAACAAAGAAAAAATCAACGTCTTCGTAGGGAAATGGAGGAGCGGGAACTTGAAGAAGCACAGGCTTTACTCCAGGAAACTGGAAAGCGTGTTGGTAAAAAGAGGGGAAAGAAGCCGGTTCTTGATTCAGAAAAGTTGACAAAGCAATCTGTAATGCAATTGGCCCTGTCTGAACAGTTACGGGAGAGGCAGGAAATGGAGAAGAAATTGCAAAAGTTAGCCAAAACAATGGATCATTTGGAAAGGGCAAAAAGAGAAGAGGAAGCATCCTTAATTAAGTCTGCATTTCAGCAACGTTTACATGAAGAAGGGATAGCTCATGAACGTAATCAGCAGCTGGAGGTTGAGTTAAGCAAGCAGCGTCATGAAGGTGACCTCAAGAAGAAGAATCGATTGATTCGAATGATGGAGAATAAGACAATTTTCCTTGAAAGGGTTATTAGTATTCGTCAAGAAGAGACTAATAGACGTAGAGTTGAGAGAGAAGAGCAGATCCGGCAACTAATTCAGGCTCGGAAAGCTGAGAGGGATGCTAAGAGGAAGAGGATATTTTATGTGAGGCGTGAGGTGGAGAGGCTAAGAATATTGCATGAAGAGGAGGAAGCACGCAAGCATGAAGAGGCGGAGGCAAGAAAGAAAGAAGAAGCAGAACGCAGGGCAAAATTGGATGAGATTGCTGAGAAGCAGAGGCAGAGGGAGCGAGAATTAGAAGAAAAGGAAAGACTGCGGAAGGAAACGCTTTTGGGGAGACAAACTGATGGGCTTTCTAGACCTGATATTCCTGCTTCTCGGCCTTCTGAGTCTGGGACTGCTGCTCCTGCTGCTGCAGCTGCCGCTGCTGGCCCAACCCCTGGAAAGTATGTGCCAAGGTTCAAACGAGAAGCCCCTGCACAGAATCCACCAGCTGAATCCGATCGATGGGGCAGCAACAGGAGTGACAATCGGCCGTCCCAACCTGATAGCTGGCGCAGCAGTGATGACCGTAGATCTACATTCGGAAGTTCAAGATCGTCGTGGTCCTCATCCAGAGTTCCTGCTCGTGGTAGCACAGACCGCTGA 2895 43.21 MTSFVKPENALKRAEELINVGQKQDALQALHDLITSKRYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVNSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKLYKRSTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDSRLYHAYAWLKLFTLQKSFNKNLSQKDLQLIASSVVLAALSVPPYDNKHGASHLELENEKERNLRMGNLLGFNLDSKLESRDVLSRANLLSELVSKGVLSCATQEVKDLYHLLEHEFFPLDLALKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQISQVYQTMKIESLSQMIPFFDFSLVEKVSVDAVKQNFIAMKVDHSRGVVLFGNLGIESDRLRDHLTVLAESLNKARGMIYPPVKKASKTSEILPDLADVIDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLKLLKITEEAEQKRLATEYEQRKNQRLRREMEERELEEAQALLQETGKRVGKKRGKKPVLDSEKLTKQSVMQLALSEQLRERQEMEKKLQKLAKTMDHLERAKREEEASLIKSAFQQRLHEEGIAHERNQQLEVELSKQRHEGDLKKKNRLIRMMENKTIFLERVISIRQEETNRRRVEREEQIRQLIQARKAERDAKRKRIFYVRREVERLRILHEEEEARKHEEAEARKKEEAERRAKLDEIAEKQRQRERELEEKERLRKETLLGRQTDGLSRPDIPASRPSESGTAAPAAAAAAAGPTPGKYVPRFKREAPAQNPPAESDRWGSNRSDNRPSQPDSWRSSDDRRSTFGSSRSSWSSSRVPARGSTDR 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4737209 4744499 + evm.model.ptg000015l.735 HCH4g0735 542979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0735 964 Coils Coil 561 600 - -
HCH4g0735 964 Coils Coil 731 751 - -
HCH4g0735 964 Coils Coil 613 642 - -
HCH4g0735 964 Pfam PCI domain 438 508 IPR000717 -
HCH4g0735 964 Pfam eIF3a, PCI domain, TPR-like region 8 407 IPR054711 -
HCH4g0735 964 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 951 IPR027512 GO:0005852(InterPro)
HCH4g0735 964 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
HCH4g0735 964 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
HCH4g0735 964 Gene3D - 269 342 - -
HCH4g0735 964 Gene3D - 363 494 - -
HCH4g0735 964 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 955 IPR027512 GO:0001732(PANTHER)|GO:0002188(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0043614(PANTHER)|GO:0071540(PANTHER)|GO:0071541(PANTHER)
HCH4g0735 964 Coils Coil 807 857 - -
HCH4g0735 964 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
HCH4g0735 964 MobiDBLite consensus disorder prediction 836 862 - -
HCH4g0735 964 Coils Coil 93 120 - -
HCH4g0735 964 MobiDBLite consensus disorder prediction 943 964 - -
HCH4g0735 964 MobiDBLite consensus disorder prediction 915 931 - -
HCH4g0735 964 Gene3D UVR domain 217 268 - -
HCH4g0735 964 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
HCH4g0735 964 Coils Coil 668 702 - -
HCH4g0735 964 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 528 IPR000717 -
HCH4g0735 964 MobiDBLite consensus disorder prediction 836 964 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0735 K03254 - csv:101215735 1399.03