Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0746 ATGGCGACTCCGGTGGAGCCTCCGAATGGGATTAGGTCCCAAGGGAAGCATTACTATTCAATGTGGCAGACATTGTTTGAGATTGATACCAAGTATGTACCAATCAAGCCCATTGGTCGAGGGGCTTATGGCATTGTGTGTTCTTCCGTGAATCGGGAAACCAATGAAAAAGTTGCGATTAAGAGGATACATAACGCGTTTGAGAATCGTATCGATGCCCTTAGGACTTTGCGTGAACTTAAGCTCCTTAGGCATCTTCGCCACGAAAATGTGATCTCTTTGAAAGATGTAATGATGCCTATTCATAGGAGAAGTTTCAAAGATGTTTATCTTGTTTACGAACTGATGGATACGGATCTACATCAGATTATCAAGTCTTCTCAAACTCTTACCAATGATCACTGCCAATACTTCCTCTTTCAGTTGCTTCGAGGCCTAAAGTATCTTCACTCGGCAAACATTCTACATCGAGACTTGAAGCCTGGGAACCTCCTTGTCAATGCAAATTGTGATCTTAAGATATGTGATTTCGGGTTAGCACGTACAAGCAATGGCAAGAACCAATTTATGACGGAGTACGTTGTCACTCGCTGGTATCGGGCACCAGAATTGCTACTTTGCTGTGATAATTACGGGACATCAATTGATGTGTGGTCTGTGGGATGTATCTTTGCGGAGCTTCTTGGTAGGAAACCAATCTTCCCCGGTACAGAGTGTTTGAACCAACTCAAATTGATAATTAACATCTTGGGTAGCCAGAGAGAGGAAGACCTTGAGTTTATAGACAATCCAAAGGCAAGGAAGTATATTAAGTCTCTCCCCTACTCTCCCGGAGCTCCATTTCCTCGTCTTTATCCACATGCCCATGCTCTTGCAATTGATCTCCTACAAAAGATGCTTGTTTTTGACCCATCAAAGAGGATCAGTGTAACTGAAGCTTTGCAACATCCTTACATGTCCCCACTTTATGATCCAAATAGCAACCCTCCAGCCCAGGTACCGATTGATCTCGACATAGACGAGGAACTTGGAGAAGAAATGATACGAGAAATGATGTGGAAAGAAATTCTCCATTACCATCCTGAAGATTTGGAAAAAAATGCAGAAATGCCTTGTTACCACCCCGAACCTACTACAGGTGACACTGTGGTGTATTCTTGA 1161 43.07 MATPVEPPNGIRSQGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVISLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQTLTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINILGSQREEDLEFIDNPKARKYIKSLPYSPGAPFPRLYPHAHALAIDLLQKMLVFDPSKRISVTEALQHPYMSPLYDPNSNPPAQVPIDLDIDEELGEEMIREMMWKEILHYHPEDLEKNAEMPCYHPEPTTGDTVVYS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4811736 4813422 + evm.model.ptg000015l.746 HCH4g0746 542990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0746 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g0746 386 SMART serkin_6 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0746 386 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0746 386 FunFam Mitogen-activated protein kinase 116 345 - -
HCH4g0746 386 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
HCH4g0746 386 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
HCH4g0746 386 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0746 386 FunFam Mitogen-activated protein kinase 18 126 - -
HCH4g0746 386 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0746 386 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
HCH4g0746 386 CDD STKc_TEY_MAPK 26 361 - -
HCH4g0746 386 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524(InterPro)
HCH4g0746 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 26 357 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1391 HCH-Chr13:41826303 HCH4g0746 HCH-Chr4:4811736 2.00E-166 dispersed
HCH4g0746 HCH-Chr4:4811736 HCH5g0539 HCH-Chr5:3699647 4.00E-112 dispersed
HCH4g0746 HCH-Chr4:4811736 HCH13g1112 HCH-Chr13:36576240 6.50E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81459 PF00069 Pkinase 1.90E-71 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0746 K20535 - csv:101213478 740.725