Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0752 ATGTTCTCTGAGAATATGGTTTTCTTCAGAGTTACCTTTGGATTCTTAATGCTAGCAGTTTCTTTAGCCCCACCATGTGCAGGCCACCCTGGTTTTGGTTTTGACTGGGGTGTTGGCATTGGTGGCGGAGTTGGCAACGGGGGTGGCGGCAGCGTTGGAAGCCAGATTGGCCTCTTTCCTGAATTTTACCAGTCCTCATGTCCTCAAGCTAATGACATTGTCATGTCTGTGTTGGAGAAGGCAATTGCCATAGAGCCTAGGATGGCTGCTTCTCTGCTTCGACTTCATTTCCACGACTGCTTTGCACAGGGTTGTGATGCATCCATCTTGTTGGATAGTACAGCCACCATAGCCAGTGAGAAGAATGCTTTGCCTAACAGAAACTCTGTAAGAGGATTTGAAGTCATAGATGAGATCAAAGAGAGGTTGGAAGAAGAATGCCCTGAGACCGTCTCCTGTGCAGACATTGTCGCTCTCGCTGCTCGTGGCTCCACTATTCTGAGTGGTGGACCATCCTGGGAGCTTCCACTGGGCAGAAAAGACTCGAAATCGGCAAGTGTAAGTCTCTCAAACAACAACATTCCTGCACCAAACTCCACAATCCAAAGCCTTATTACACTCTTCAGCCGCCAAGGTCTAGATGAAGTAGACCTTGTAGCACTCTCAGGAGGGCACACGATTGGGGTAGCAAGGTGCTTGACATTCAAGCAGAGATTATACAACCAAAATGGAAACAGTGAACCAGATGAGACACTTGAAAAAAGCTACTACTATGGTCTGAAATCATTGTGCCCTCCATCAGGAGGAGACAGCAACATATTTCCTTTGGACTACGGTTCTCCAGCGAAATTCGACAACACGTATTTCAAGCTGATACTATGGGGAAAAGGGCTGTTGAATTCAGATGAAGTGCTTTTGACAGGAAATGTGGAGAAGACAGTGGAGTTGGTGAAGGCTTATGCAGAAGATGAAGCTCTCTTCTATGATCAGTTTGCTAAGTCAATGGTTAATATGGGAAATATAAATCCTCTTGTTGGATTTAATGGTGAAGTTAGAAAGAATTGTCATTTTGTTAATGATGTTTAA 1086 45.12 MFSENMVFFRVTFGFLMLAVSLAPPCAGHPGFGFDWGVGIGGGVGNGGGGSVGSQIGLFPEFYQSSCPQANDIVMSVLEKAIAIEPRMAASLLRLHFHDCFAQGCDASILLDSTATIASEKNALPNRNSVRGFEVIDEIKERLEEECPETVSCADIVALAARGSTILSGGPSWELPLGRKDSKSASVSLSNNNIPAPNSTIQSLITLFSRQGLDEVDLVALSGGHTIGVARCLTFKQRLYNQNGNSEPDETLEKSYYYGLKSLCPPSGGDSNIFPLDYGSPAKFDNTYFKLILWGKGLLNSDEVLLTGNVEKTVELVKAYAEDEALFYDQFAKSMVNMGNINPLVGFNGEVRKNCHFVNDV 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4843382 4845139 - evm.model.ptg000015l.752 HCH4g0752 542996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0752 361 PANTHER PEROXIDASE 72-RELATED 23 358 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 ProSitePatterns Peroxidases active site signature. 89 100 IPR019794 GO:0004601(InterPro)
HCH4g0752 361 FunFam Peroxidase 61 203 - -
HCH4g0752 361 FunFam Peroxidase 195 338 - -
HCH4g0752 361 CDD secretory_peroxidase 58 358 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH4g0752 361 ProSitePatterns Peroxidases proximal heme-ligand signature. 217 227 IPR019793 -
HCH4g0752 361 ProSiteProfiles Plant heme peroxidase family profile. 57 359 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 PRINTS Haem peroxidase superfamily signature 217 232 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 PRINTS Haem peroxidase superfamily signature 169 181 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 PRINTS Haem peroxidase superfamily signature 277 292 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 PRINTS Haem peroxidase superfamily signature 89 103 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 PRINTS Haem peroxidase superfamily signature 151 168 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 PRINTS Plant peroxidase signature 91 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 PRINTS Plant peroxidase signature 131 144 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 PRINTS Plant peroxidase signature 67 86 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 PRINTS Plant peroxidase signature 333 346 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 PRINTS Plant peroxidase signature 169 184 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 PRINTS Plant peroxidase signature 150 160 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 PRINTS Plant peroxidase signature 216 228 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 PRINTS Plant peroxidase signature 291 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 PRINTS Plant peroxidase signature 275 290 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 SUPERFAMILY Heme-dependent peroxidases 58 359 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 Pfam Peroxidase 75 323 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0752 361 Gene3D Peroxidase, domain 2 195 338 - -
HCH4g0752 361 Gene3D - 62 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1387 HCH-Chr13:41797116 HCH4g0752 HCH-Chr4:4843382 1.00E-111 dispersed
HCH4g0752 HCH-Chr4:4843382 HCH5g0300 HCH-Chr5:1873911 3.10E-87 dispersed
HCH1g0841 HCH-Chr1:57003576 HCH4g0752 HCH-Chr4:4843382 1.90E-78 transposed
HCH14g0610 HCH-Chr14:34853882 HCH4g0752 HCH-Chr4:4843382 8.60E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0752 K00430 - ath:AT1G44970 507.294