Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0753 ATGGATCTTCTTGGAGCTGCCGATGATACCAATAGTCAAATTCGGGGACTTTCACTATCTCTTGGCACTCACGTGCCTTATTCTTCAGTTGAATATAGGCACAGGACATTAGATTCGGATCTAATCCCAAATTACTCTATTTGTGGTGAAGAAGCTAGAGGTGTCAGCAATATGGGAGGGCCACATTTAAATGATGATTATGCTTTTGCTGCCACTGCTTTTGGTTCAACATCAATCTCGCTCAATCATTCTAGTTCCTCTTCATATGGTGGGGTATCGTTTGCATCAATCATTAGCAATTCAAGATATTTAAGGCCAACACAATCTCTTTTGGAAGAAATTGTTAATGTCAGTGGAAAAGCTACAGATATAGATAGTGATGTATATTCTGGAAAGCTATCTTGTATAGGAAGAAGAGAAGGTCTTTCGGCAGAGTTGAGAGCAGAACTGTGTAACAAAGGGCTCCTGCAAGCTGAAAAACATGAATACCAACTTAAAATAACAACGCTCATTTCCCTGTTGGAGGAGGTTGAGGGTCGGTATGAAAATTACTATCATCAGATGGAAGGAGTGGTCTCATCTTTTGAAATGATGGCAGGTTTTGGAGCAGCCAAGTCTTACACTACTCTGGCACTCCAGGCCATGTCCAGGCATTTCTGTAGTTTAAGAGATGCTATTGTTTCCCAAATAAATATAGAGAAGAGAAAACTATTGCAAACTTTACCATTAATCAGCACAGGACTATCACAGCTTAGCTTGTTTGACAACAGAGAGACTAGAAACAATAGAATGACTCTTCAACAAGTTGGAATGATTCACAACCAACGCCAAGTTTGGAGGCCCATCAGAGGATTGCCAGAAACCTCCGTGTCAATACTGCGCTCTTGGCTTTTTGAACATTTTCTCCATCCTTATCCAAATGAATCTGAAAAGCTAATGCTGGCATCGCAAACCGGCCTGACCAAGAATCAAGTATCAAATTGGTTCATTAATGCTCGAGTTCGTTTATGGAAGCCAATGATAGAGGATATGTACAAAGAAGAGTTTGGGGACTCTTCCAAAGACTCAAACCCACAAGCTAGCTGCTCGATTTTAGGAAATGGTTCTGCAGATTATGCAGATGATTGA 1128 40.69 MDLLGAADDTNSQIRGLSLSLGTHVPYSSVEYRHRTLDSDLIPNYSICGEEARGVSNMGGPHLNDDYAFAATAFGSTSISLNHSSSSSYGGVSFASIISNSRYLRPTQSLLEEIVNVSGKATDIDSDVYSGKLSCIGRREGLSAELRAELCNKGLLQAEKHEYQLKITTLISLLEEVEGRYENYYHQMEGVVSSFEMMAGFGAAKSYTTLALQAMSRHFCSLRDAIVSQINIEKRKLLQTLPLISTGLSQLSLFDNRETRNNRMTLQQVGMIHNQRQVWRPIRGLPETSVSILRSWLFEHFLHPYPNESEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEDMYKEEFGDSSKDSNPQASCSILGNGSADYADD 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4846249 4847630 - evm.model.ptg000015l.753 HCH4g0753 542997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0753 375 SMART HOX_1 279 343 IPR001356 GO:0003677(InterPro)
HCH4g0753 375 SMART prehox3 92 228 IPR006563 -
HCH4g0753 375 MobiDBLite consensus disorder prediction 349 375 - -
HCH4g0753 375 CDD homeodomain 279 340 IPR001356 GO:0003677(InterPro)
HCH4g0753 375 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 82 356 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH4g0753 375 Pfam Homeobox KN domain 296 335 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH4g0753 375 ProSiteProfiles 'Homeobox' domain profile. 298 339 IPR001356 GO:0003677(InterPro)
HCH4g0753 375 Pfam Associated with HOX 98 227 IPR006563 -
HCH4g0753 375 Gene3D - 273 354 - -
HCH4g0753 375 SUPERFAMILY Homeodomain-like 285 346 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0753 HCH-Chr4:4846249 HCH4g1319 HCH-Chr4:9296258 3.40E-60 dispersed
HCH2g0479 HCH-Chr2:48310821 HCH4g0753 HCH-Chr4:4846249 1.70E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33471 PF07526 POX 6.20E-39 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0753 - - - 0.0