Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0761 ATGAATTCTTGGGAGAAAAGGCAGCAAGTAAAGAAACCAGCGCAAGCAGGTTCAAGAAAAGGGTGCATGAGAGGGAAAGGAGGTCCTGAAAACGCAAGTTGCACTTATAAAGGAGTTCGTCAGCGGACTTGGGGTAAGTGGGTGGCTGAGATTCGTGAGCCTAACCGTGGTGCTCGTCTTTGGCTTGGTACTTTTGACACTTCCCATGAAGCTGCCATGGCTTATGATGCTGCCGCTCGTCGTCTTTACGGCTCCCAAGCCAAGCTCAATCTCCCGGACCTCTCTATCAATCATCAAATGGAAAACCAACCTCAAATTCTTCCGGTTTCTGCTTCTTCTTCTTCTGTTCACCGCGTTCCGGTTGCGGTGGAGGATATGGGATTACACAATAATGATAATATTAGATTCAGTGAGATTGAAGAAGAGATTGGAGGAATATGGAGGAATTTGAGTATGAGTTTAGATGAATCTATTTGGGAAGAAGCAGCTATGTCTTTGGATTTTCCAAATCAGGAAATATTTCCTGCAAATTTGGTGGATTCAAATGGATGGGATACACTGCAATGGTGCACATGA 576 44.79 MNSWEKRQQVKKPAQAGSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARRLYGSQAKLNLPDLSINHQMENQPQILPVSASSSSVHRVPVAVEDMGLHNNDNIRFSEIEEEIGGIWRNLSMSLDESIWEEAAMSLDFPNQEIFPANLVDSNGWDTLQWCT 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4894477 4895052 + evm.model.ptg000015l.761 HCH4g0761 543005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0761 191 FunFam Ethylene-responsive transcription factor 2 34 93 - -
HCH4g0761 191 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0761 191 SMART rav1_2 35 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0761 191 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0761 191 CDD AP2 34 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0761 191 MobiDBLite consensus disorder prediction 1 34 - -
HCH4g0761 191 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 118 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
HCH4g0761 191 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677(InterPro)
HCH4g0761 191 Pfam AP2 domain 36 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0761 191 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0761 191 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0560 HCH-Chr13:3974090 HCH4g0761 HCH-Chr4:4894477 3.40E-18 dispersed
HCH13g0567 HCH-Chr13:4342566 HCH4g0761 HCH-Chr4:4894477 6.40E-32 dispersed
HCH4g0761 HCH-Chr4:4894477 HCH9g0802 HCH-Chr9:5546165 1.30E-28 dispersed
HCH12g0161 HCH-Chr12:859769 HCH4g0761 HCH-Chr4:4894477 2.10E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33472 PF00847 AP2 1.50E-15 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0761 - - - 0.0