Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0763 ATGGCGGATACAGGCTCAGCCTCAGACAAGAGAATGTGGTGTTCAATACCTGAAAGATTCCAACTTCATGCAGCCATGTTGGCTTTGCAGTTTGGATATGCCGGTTTTCATGTCGTTTCTAGAGCTGCCCTTAATATGGGAATTAGTAAACTCGTCTTTCCTGTCTACAGAAACGTTATCGCCTTGCTTCTTCTCCTTCCTTTTGCCTTTTTCATTGAAAAGAAGGATAGGCCTGCTCTCACTCTTAACTTTGTCCTTCAGTTCTTCCTCCTCGCTCTCATTGGAATCACAGCCAACCAAGGGTTTTACTTGCTGGGTTTGGACAATACGTCCCCCACCTTTGCTTCTGCAATTCAGAATTCTGTTCCTGCTATTACTTTCCTCATGGCCGCCCTTCTTAGGATAGAACAGGTACGACTGAACAGAAAAGATGGAATAGCAAAGGTGGTGGGAACGTTCTGCTGCGTGGCTGGGGCGACAGTGATCACCTTATACAAGGGGCCAACCATATACAGCCCGGCAGGTTCGACGGTCCGTCTCACGGCGGCGGAGATGTTTCCATCATTAGGTGACGCCAATGGCAAGAGCTGGACCCTCGGCTGCGTGTACCTGATCGGGCATTGCTTGTCATGGTCAGCGTGGCTTGTTTTGCAGGCACCGGTGTTGAAAAAGTACCCGGCGCGGCTGTCGGTGACTTCCTACACTTGTTTCTTTGGACTCATTCAATTCTTCATAATTGCTTTGATCTTTGAACGAGACGCTCAGGCTTGGCTCTTCCACTCTAGTGGTGAAGCCTTCAGTATTGTGTATGCGGGAGTGGTGGCCTCTGGGATTGCGTTTGCTGTACAGATATGGTGCATTGACAGAGGTGGCCCGGTCTTCGTTGCTGTCTACCAACCTGTTCAAACATTTGTTGTCGCTCTTATGGCTTCCTTCGCTTTGGGTGAAGAGTTCTACTTGGGAGGGATCATAGGGGCGGTGCTGATCATAACGGGACTGTATTTCGTGCTGTGGGGAAAGAGCGAAGAAAAGAAGTTCTTATTAGAAAGGGCAGTGATTCAGTCCGCACCGGATCACAGTAGCACCAGAACAAGTGGCCACATCAAGACCCTTAGTCAGCCACTCCTCCATCCTACGGCTGAAAATGTTTGA 1152 49.22 MADTGSASDKRMWCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALLLLLPFAFFIEKKDRPALTLNFVLQFFLLALIGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAALLRIEQVRLNRKDGIAKVVGTFCCVAGATVITLYKGPTIYSPAGSTVRLTAAEMFPSLGDANGKSWTLGCVYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSYTCFFGLIQFFIIALIFERDAQAWLFHSSGEAFSIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVALMASFALGEEFYLGGIIGAVLIITGLYFVLWGKSEEKKFLLERAVIQSAPDHSSTRTSGHIKTLSQPLLHPTAENV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4901402 4903736 - evm.model.ptg000015l.763 HCH4g0763 543007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0763 383 SUPERFAMILY Multidrug resistance efflux transporter EmrE 244 341 - -
HCH4g0763 383 Pfam EamA-like transporter family 199 337 IPR000620 GO:0016020(InterPro)
HCH4g0763 383 Pfam EamA-like transporter family 27 163 IPR000620 GO:0016020(InterPro)
HCH4g0763 383 PANTHER WAT1-RELATED PROTEIN 24 354 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
HCH4g0763 383 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0843 HCH-Chr12:5513195 HCH4g0763 HCH-Chr4:4901402 2.30E-59 dispersed
HCH4g0763 HCH-Chr4:4901402 HCH8g1139 HCH-Chr8:47039148 7.90E-113 dispersed
HCH12g0160 HCH-Chr12:855011 HCH4g0763 HCH-Chr4:4901402 1.20E-185 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0763 - - - 0.0