Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0766 ATGGATCTGTTACGATCGGAGCCGATGCAATTGGTGCAGCTAATCATTCCTAACGAATCAGCGCACAAGACGATCTCTTACATTGGCGATCTCGGTCTCTTCCAATTCAACGATCTCAATGCGGATAAAAGTCCATTCCAGAGGATGTATGCTGCTCAGATTAAAAGACGTGGGGAAATGGCTCGCAAGCTGCGGTTTTTCCGGGAGCAAATGACAAGGGCTGGTTTGTCACCCTCCTTAAATTCTCTAGGGGGTCCCGATTTTGATCTGGACAATTTGGAGGTCAAACTCGGGGAACTTGAAGCGGAGTTGTTAGAGATAAACAACAACAACGAAAAGTTACAGCACAATTATAGTGAGCTATTGGAATATAAGCTTGTATTGCAGAAGGTTGGTGAGTTTTTCAATCAAGCTCAAAGCATTGCTGCAGCTCAGCAAAGAGGGCTAGAAGTGCAGCAAAACGGTGAAGGAACAATTGACAGTCCCTTATTACTGGAACAGGAAATGACAACTGATCCAATGAAGCAAGTTAAACTAGGATTTATCAGTGGTCTTGTTCCCAGAGAAAAGTCAATGGCTTTTGAAAGGATTTTGTTTCGTGCAACAAGGGGCAACGTGTATCTGAGGCAATCTGTGGTTGATGGTCCTGTCACTGATCCTTTATCTGGAGAGAAGGTCGAGAAAAATGTGTTTGTCATATTCTATTCTGGAGAAAGAGCAAAGAATAAAATTCTTAAAATATGTGAAGCTTTTGGAGCAAACCGTTATCCATTTACTGATGACTTAGGCAAACAATTTCAGACGATTACAGAGGTGTCTGGAAGACTCTCTGATTTGAAGACTACCATTGAGGTCGGCCAGCTGCACCGAAGTAAAATCTTACAGATGATTGGCCATCAATATGAGCAGTGGAATCTCCTGGTAAAGAAGGAAAAGTCCATTTATCACACTTTGAATATGTTCAGCGTTGATGTAACAAAGAAATGCCTTGTAGGTGAAGGCTGGTGTCCTGTTTTTGCAACAAATCAGATTCAAAGTGCTATGCAGCAGGCAACCTATGACAGCAGATCACAAATTCAGGCTATTTTTCATGTTTTGAATACAAAGGAATTACCACCAACATATTTCCGTACAAACAAATTTACTTCTTCATTTCAAGAGATAGTGGATGCATATGGGGTTGCCAAGTATCAGGAAGCAAATCCTGGAGTTTACACGATTGTCACCTTCCCATTCCTTTTTGCTGTAATGTTTGGTGATTGGGGCCATGGCATATGCTTGTTGCTGGCAACGTTATATTTTATAACAAGGGAGAAGAAATTTTCCAGTCAGAAACTTGGAGATATCATGGAAATGACTTTTGGGGGCCGTTATGTTATCATGATGATGGCACTTTTTTCAATCTTCACTGGACTGATATACAATGAATTTTTTTCTGTCCCCTTTGAACTATTTGGGCCTTCTGCATACGGTTGTCGCGATACTTCATGCAGGGATGCTACTACCATCGGTTTAGTGAAGGTTCGTGGTACATATCCATTTGGCGTGGATCCTAAGTGGCATGGCACTCGAAGTGAGTTACCTTTTCTCAACTCTTTGAAGATGAAAATGTCCATCCTACTGGGAGTAGCTCAAATGAATCTTGGAATTATACTGAGTTACTTCAATGCTAAATTCTTTGGAGAAAGCATTAACATATGGTACCAATTTGTTCCACAGATGATATTTTTGAACAGCTTATTTGGGTACCTCTCACTCCTCATAATTGTGAAATGGTGCTCTGGATCTCAAGCTGATCTGTATCACATTTTGATATATATGTTCTTGAGTCCTACAGATGATCTAGGCGAAAATCAGCTTTTCCCAGGCCAGAAGTTTCTTCAGCTTCTCTTACTTTTGGCTGCCCTTATTGCTGTGCCATGGATGTTATTTCCCAAGCCTTTTCTGTTGAAGAAGCAATATGAAGAAAGGCACCAAGGTCAATCCTACTCACTCCTTGATAGCACCGATGACAATCTTGAAATGGAGCCACATAAAAATTCCCATGGTCATGAGGATTTCGAGTTTAGTGAGGTTTTTGTACACCAACTTATCCATACCATAGAGTTTGTGCTTGGGGCAGTTTCTAATACAGCTTCCTATCTACGTTTATGGGCCCTCAGTCTAGCCCATTCGGAGTTGTCCAGTGTATTTTACGACAAGATTCTGCTTCTTGCTTGGGGGTTCAAAAATACAATCATTCTAATAGTTGGAATAGTTGTTTTCGTTTGTGCAACCGTTGGTGTTTTACTAGTTATGGAGACACTGAGCGCATTCCTACACGCCTTGCGGCTTCACTGGGTAGAGTTTCAGAACAAATTCTATGCAGGAGATGGATACAAATTTTCCCCGTTTTCGTTTTCATTGCTTCAAGAGGAGGATGAATGA 2427 41.2 MDLLRSEPMQLVQLIIPNESAHKTISYIGDLGLFQFNDLNADKSPFQRMYAAQIKRRGEMARKLRFFREQMTRAGLSPSLNSLGGPDFDLDNLEVKLGELEAELLEINNNNEKLQHNYSELLEYKLVLQKVGEFFNQAQSIAAAQQRGLEVQQNGEGTIDSPLLLEQEMTTDPMKQVKLGFISGLVPREKSMAFERILFRATRGNVYLRQSVVDGPVTDPLSGEKVEKNVFVIFYSGERAKNKILKICEAFGANRYPFTDDLGKQFQTITEVSGRLSDLKTTIEVGQLHRSKILQMIGHQYEQWNLLVKKEKSIYHTLNMFSVDVTKKCLVGEGWCPVFATNQIQSAMQQATYDSRSQIQAIFHVLNTKELPPTYFRTNKFTSSFQEIVDAYGVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATLYFITREKKFSSQKLGDIMEMTFGGRYVIMMMALFSIFTGLIYNEFFSVPFELFGPSAYGCRDTSCRDATTIGLVKVRGTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNAKFFGESINIWYQFVPQMIFLNSLFGYLSLLIIVKWCSGSQADLYHILIYMFLSPTDDLGENQLFPGQKFLQLLLLLAALIAVPWMLFPKPFLLKKQYEERHQGQSYSLLDSTDDNLEMEPHKNSHGHEDFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKILLLAWGFKNTIILIVGIVVFVCATVGVLLVMETLSAFLHALRLHWVEFQNKFYAGDGYKFSPFSFSLLQEEDE 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4922579 4930057 - evm.model.ptg000015l.766 HCH4g0766 543010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0766 808 PANTHER VACUOLAR PROTON ATPASES 1 806 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
HCH4g0766 808 Pfam V-type ATPase 116kDa subunit family 27 800 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH4g0766 808 Coils Coil 90 117 - -
HCH4g0766 808 PIRSF ATP6V0A1 1 808 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1144 HCH-Chr2:54103023 HCH4g0766 HCH-Chr4:4922579 2.40E-300 dispersed
HCH4g0766 HCH-Chr4:4922579 HCH7g0534 HCH-Chr7:4096968 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0766 K02154 - csv:101209817 1394.41