Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g0768 | ATGAAGATTCAGTGCGATGTCTGTGAAAAAGGTGAGGCCTCGGTGTTTTGCACGGCGGACGAAGCTGCTCTCTGCGACCTCTGCGATCACCGAGTGCACCATGCCAACAAGCTTGCTTCGAAGCACCATCGTTTTTCCCTGCTTCACCCCTCTTCTAAGGATATCCCTATCTGCGACGTCTGTCGGGAAAGAAGAGCTTTCTTGTTCTGTCAGCAAGATAGAGCGATTCTTTGCCGAGAGTGTGATCATCCAATTCATTCAGCTAATGAACTCACTCAAAAGCATGATAGGTTTCTTCTTACTGGGATTAAGCTCTCTGCAAAGACTGCTCTTTATACGCCCCCTTCCTCAAATGCTAAATCAACCGCGAGCTCTAATCACGTCGTTGCTGATCCTCGGCAGAAGCCCTTAGCCAAAAAATCTGTCACTGTTTCTGCTTCAGCCATGAAAGGCACACCAAGTTCTAATTCCAATAATGAGCCACCGGCTATCGCTTGCGCGCCTCCCCCGGCAACGGTTAACAAAGGCGGCGGCGGGCTAAATGAAGGGGGCGGGGGTGGCTTAACGAGTAGCATATCAGAATACTTGATGGAAACACTTCCTGGGTGGCATTTTGAAGACTTTCTTGATTCTGCTGCTTATGCTCCTCCCTTTTTTGGTTTCTCCAAGAAAGATGAAGTCGGATTTCCATTTTTGGAAGGCGATCTTGATAGCAGTCTAGGTGCCGCTTTTTCATCGGAAAGTCTGGAGCTTTGGGTCCCTCAGGCTCAAGGACAGGGGCCATATCCTCACTATCCTTCACAAATGATGAGTAATGGGCTGAATAATATTGGTTTGAAGGAGACAAAGGAAGCCATAAACACAAAAGTAAATAGAGTATGGACAGATGATGGCTTCACTGTGCCACAGATCAGACGCCCATCTACAGGTTTTAAGAGATCCAGACCTTTTTACTAG | 957 | 47.54 | MKIQCDVCEKGEASVFCTADEAALCDLCDHRVHHANKLASKHHRFSLLHPSSKDIPICDVCRERRAFLFCQQDRAILCRECDHPIHSANELTQKHDRFLLTGIKLSAKTALYTPPSSNAKSTASSNHVVADPRQKPLAKKSVTVSASAMKGTPSSNSNNEPPAIACAPPPATVNKGGGGLNEGGGGGLTSSISEYLMETLPGWHFEDFLDSAAYAPPFFGFSKKDEVGFPFLEGDLDSSLGAAFSSESLELWVPQAQGQGPYPHYPSQMMSNGLNNIGLKETKEAINTKVNRVWTDDGFTVPQIRRPSTGFKRSRPFY | 318 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 4955398 | 4956886 | + | evm.model.ptg000015l.768 | HCH4g0768 | 543012 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g0768 | 318 | CDD | Bbox1_BBX-like | 5 | 47 | IPR049808 | - | |
| HCH4g0768 | 318 | CDD | Bbox1_BBX-like | 57 | 100 | IPR049808 | - | |
| HCH4g0768 | 318 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
| HCH4g0768 | 318 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 306 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) | |
| HCH4g0768 | 318 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
| HCH4g0768 | 318 | SMART | bboxneu5 | 53 | 100 | IPR000315 | GO:0008270(InterPro) | |
| HCH4g0768 | 318 | Gene3D | Classic Zinc Finger | 1 | 95 | - | - | |
| HCH4g0768 | 318 | ProSiteProfiles | Zinc finger B-box type profile. | 53 | 100 | IPR000315 | GO:0008270(InterPro) | |
| HCH4g0768 | 318 | Pfam | B-box zinc finger | 56 | 96 | IPR000315 | GO:0008270(InterPro) | |
| HCH4g0768 | 318 | MobiDBLite | consensus disorder prediction | 114 | 161 | - | - | |
| HCH4g0768 | 318 | MobiDBLite | consensus disorder prediction | 114 | 129 | - | - | |
| HCH4g0768 | 318 | MobiDBLite | consensus disorder prediction | 145 | 161 | - | - | |
| HCH4g0768 | 318 | FunFam | B-box zinc finger protein 21 | 1 | 98 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g0050 | HCH-Chr10:432060 | HCH4g0768 | HCH-Chr4:4955398 | 1.00E-30 | transposed | |
| HCH12g0156 | HCH-Chr12:825143 | HCH4g0768 | HCH-Chr4:4955398 | 1.40E-55 | wgd | |
| HCH14g0629 | HCH-Chr14:34995784 | HCH4g0768 | HCH-Chr4:4955398 | 1.90E-19 | wgd | |
| HCH2g0486 | HCH-Chr2:48418923 | HCH4g0768 | HCH-Chr4:4955398 | 1.70E-39 | wgd | |
| HCH4g0768 | HCH-Chr4:4955398 | HCH7g0529 | HCH-Chr7:4055289 | 5.90E-45 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33474 | PF00643 | zf-B_box | 1.10E-05 | No_clan | HCH | TR |
Pathway information