Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0768 ATGAAGATTCAGTGCGATGTCTGTGAAAAAGGTGAGGCCTCGGTGTTTTGCACGGCGGACGAAGCTGCTCTCTGCGACCTCTGCGATCACCGAGTGCACCATGCCAACAAGCTTGCTTCGAAGCACCATCGTTTTTCCCTGCTTCACCCCTCTTCTAAGGATATCCCTATCTGCGACGTCTGTCGGGAAAGAAGAGCTTTCTTGTTCTGTCAGCAAGATAGAGCGATTCTTTGCCGAGAGTGTGATCATCCAATTCATTCAGCTAATGAACTCACTCAAAAGCATGATAGGTTTCTTCTTACTGGGATTAAGCTCTCTGCAAAGACTGCTCTTTATACGCCCCCTTCCTCAAATGCTAAATCAACCGCGAGCTCTAATCACGTCGTTGCTGATCCTCGGCAGAAGCCCTTAGCCAAAAAATCTGTCACTGTTTCTGCTTCAGCCATGAAAGGCACACCAAGTTCTAATTCCAATAATGAGCCACCGGCTATCGCTTGCGCGCCTCCCCCGGCAACGGTTAACAAAGGCGGCGGCGGGCTAAATGAAGGGGGCGGGGGTGGCTTAACGAGTAGCATATCAGAATACTTGATGGAAACACTTCCTGGGTGGCATTTTGAAGACTTTCTTGATTCTGCTGCTTATGCTCCTCCCTTTTTTGGTTTCTCCAAGAAAGATGAAGTCGGATTTCCATTTTTGGAAGGCGATCTTGATAGCAGTCTAGGTGCCGCTTTTTCATCGGAAAGTCTGGAGCTTTGGGTCCCTCAGGCTCAAGGACAGGGGCCATATCCTCACTATCCTTCACAAATGATGAGTAATGGGCTGAATAATATTGGTTTGAAGGAGACAAAGGAAGCCATAAACACAAAAGTAAATAGAGTATGGACAGATGATGGCTTCACTGTGCCACAGATCAGACGCCCATCTACAGGTTTTAAGAGATCCAGACCTTTTTACTAG 957 47.54 MKIQCDVCEKGEASVFCTADEAALCDLCDHRVHHANKLASKHHRFSLLHPSSKDIPICDVCRERRAFLFCQQDRAILCRECDHPIHSANELTQKHDRFLLTGIKLSAKTALYTPPSSNAKSTASSNHVVADPRQKPLAKKSVTVSASAMKGTPSSNSNNEPPAIACAPPPATVNKGGGGLNEGGGGGLTSSISEYLMETLPGWHFEDFLDSAAYAPPFFGFSKKDEVGFPFLEGDLDSSLGAAFSSESLELWVPQAQGQGPYPHYPSQMMSNGLNNIGLKETKEAINTKVNRVWTDDGFTVPQIRRPSTGFKRSRPFY 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4955398 4956886 + evm.model.ptg000015l.768 HCH4g0768 543012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0768 318 CDD Bbox1_BBX-like 5 47 IPR049808 -
HCH4g0768 318 CDD Bbox1_BBX-like 57 100 IPR049808 -
HCH4g0768 318 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
HCH4g0768 318 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 306 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
HCH4g0768 318 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
HCH4g0768 318 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
HCH4g0768 318 Gene3D Classic Zinc Finger 1 95 - -
HCH4g0768 318 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
HCH4g0768 318 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270(InterPro)
HCH4g0768 318 MobiDBLite consensus disorder prediction 114 161 - -
HCH4g0768 318 MobiDBLite consensus disorder prediction 114 129 - -
HCH4g0768 318 MobiDBLite consensus disorder prediction 145 161 - -
HCH4g0768 318 FunFam B-box zinc finger protein 21 1 98 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0768 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0050 HCH-Chr10:432060 HCH4g0768 HCH-Chr4:4955398 1.00E-30 transposed
HCH12g0156 HCH-Chr12:825143 HCH4g0768 HCH-Chr4:4955398 1.40E-55 wgd
HCH14g0629 HCH-Chr14:34995784 HCH4g0768 HCH-Chr4:4955398 1.90E-19 wgd
HCH2g0486 HCH-Chr2:48418923 HCH4g0768 HCH-Chr4:4955398 1.70E-39 wgd
HCH4g0768 HCH-Chr4:4955398 HCH7g0529 HCH-Chr7:4055289 5.90E-45 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH9g0345 . 19 366 C2C2-CO-like Transcription Factor Family AT5G15850 50.3 1.2e-57 220.7
HCH4g0488 . 1 346 C2C2-CO-like Transcription Factor Family AT5G24930 60.5 3.1e-82 302.4
HCH8g1002 . 20 370 C2C2-CO-like Transcription Factor Family AT5G24930 51.2 6.4e-56 214.9
HCH8g1002 . 1 370 C2C2-CO-like Transcription Factor Family AT5G57660 51.6 2.1e-67 253.1
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 55.4 8.6e-88 320.9
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 52.8 1.8e-82 303.1
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 6.2e-86 314.7
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 52.8 2.9e-83 305.8
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 6.2e-86 314.7
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 52.8 2.9e-83 305.8
HCH7g0529 . 1 204 C2C2-CO-like Transcription Factor Family AT1G75540 54.6 5.2e-52 201.8
HCH12g0156 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 50.9 2.6e-51 199.5
HCH13g1365 . 1 183 C2C2-CO-like Transcription Factor Family AT2G21320 60.1 3.4e-55 211.5
HCH14g0629 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 54.3 6.9e-48 187.2
HCH13g1365 . 1 184 C2C2-CO-like Transcription Factor Family AT4G38960 62.5 3.3e-56 214.9
HCH14g0629 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 56.8 2.4e-51 198.7
HCH7g0529 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 58.1 2.1e-55 212.6
HCH4g0768 . 1 210 C2C2-CO-like Transcription Factor Family AT4G39070 51.9 1.8e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004397 2 1 1 2 2 1 1 2 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 2 3 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33474 PF00643 zf-B_box 1.10E-05 No_clan HCH TR