Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0772 ATGTCGACAACGTTCAGCGGCGATGAAACGGCTCCGTTCTTCGGCTTCCTCGGCGCCGCCGCAGCTCTCGTCTTTTCCTGTATGGGAGCTGCTTATGGAACGGCGAAGAGCGGTGTAGGAGTAGCGTCGATGGGAGTAATGAGGCCTGAATTGGTTATGAAATCGATTGTTCCAGTTGTTATGGCTGGTGTCTTGGGAATTTACGGTTTGATTATTGCTGTTATTATTAGTACTGGTATTAACCCTAAGGCTAAATCTTATTACCTTTTTGATGGATATGCTCATTTGTCTTCTGGTCTTGCTTGTGGCCTTGCTGGTCTCTCTGCTGGTATGGCTATCGGGATCGTCGGTGATGCCGGTGTTAGAGCAAATGCACAGCAGCCTAAGCTTTTTGTTGGGATGATTCTTATTCTAATTTTTGCTGAAGCGCTGGCCCTTTATGGACTTATCGTCGGTATTATTCTCTCTTCCCGAGCTGGGCAGTCAAGAGCTGATTAA 498 47.19 MSTTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 4978082 4979277 - evm.model.ptg000015l.772 HCH4g0772 543016

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0772 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
HCH4g0772 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH4g0772 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH4g0772 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH4g0772 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH4g0772 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
HCH4g0772 165 Gene3D - 11 162 IPR035921 -
HCH4g0772 165 FunFam V-type proton ATPase proteolipid subunit 11 162 - -
HCH4g0772 165 NCBIfam V-type ATPase subunit C 13 121 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH4g0772 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
HCH4g0772 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
HCH4g0772 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 2 159 - GO:0016021(PANTHER)
HCH4g0772 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
HCH4g0772 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0772 K02155 - - mdm:103450546 286.574
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0968 HCH-Chr13:15956808 HCH4g0772 HCH-Chr4:4978082 7.30E-35 dispersed
HCH4g0772 HCH-Chr4:4978082 HCH4g0774 HCH-Chr4:4983942 8.20E-75 dispersed
HCH4g0772 HCH-Chr4:4978082 HCH4g0773 HCH-Chr4:4980981 9.70E-76 tandem
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g0577 . 1 1001 Primary Pumps ATPases(2) AT1G10130 83.1 0.0e+00 1632.1
HCH2g1144 . 1 812 Primary Pumps ATPases(2) AT2G28520 80.7 0.0e+00 1333.9
HCH7g0534 . 12 815 Primary Pumps ATPases(2) AT2G28520 63.3 6.9e-300 1026.5
HCH4g0766 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-298 1022.3
HCH7g0534 . 6 820 Primary Pumps ATPases(2) AT2G21410 77.5 0.0e+00 1271.1
HCH4g0766 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.3 0.0e+00 1218.4
HCH2g1144 . 9 818 Primary Pumps ATPases(2) AT2G21410 61.9 2.1e-296 1015.0
HCH7g0534 . 1 820 Primary Pumps ATPases(2) AT4G39080 78.2 0.0e+00 1276.9
HCH4g0766 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.9 0.0e+00 1212.6
HCH2g1144 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.2 3.6e-296 1014.2
HCH4g0772 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH4g0773 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH4g0774 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH12g0811 . 28 165 Primary Pumps ATPases(2) AT4G34720 94.9 1.2e-58 222.6
HCH4g0774 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 7.7e-67 250.4
HCH4g0772 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 2.9e-66 248.4
HCH4g0773 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 2.9e-66 248.4
HCH12g0811 . 2 165 Primary Pumps ATPases(2) AT1G75630 77.3 1.2e-64 243.0
HCH4g0772 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0773 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0774 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
HCH12g0811 . 3 165 Primary Pumps ATPases(2) AT2G16510 94.5 1.9e-71 265.4
HCH4g0772 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.5e-52 201.4
HCH4g0773 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.5e-52 201.4
HCH4g0774 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 3.3e-52 201.1
HCH12g0811 . 1 122 Primary Pumps ATPases(2) AT1G19910 93.4 1.4e-50 195.7
HCH4g0410 . 9 180 Primary Pumps ATPases(2) AT2G25610 84.3 3.8e-70 261.5
HCH12g0344 . 10 148 Primary Pumps ATPases(2) AT2G25610 58.5 3.4e-39 158.7
HCH4g0772 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH4g0773 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH4g0774 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH12g0811 . 28 165 Primary Pumps ATPases(2) AT4G38920 94.9 3.4e-58 221.1
HCH4g0410 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 7.3e-76 280.4
HCH12g0344 . 1 148 Primary Pumps ATPases(2) AT4G32530 52.4 1.7e-40 162.9
HCH3g1300 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.9 0.0e+00 1684.5
HCH10g0972 . 9 1049 Primary Pumps ATPases(2) AT1G07810 65.0 0.0e+00 1302.3
HCH3g1300 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.7 0.0e+00 1683.7
HCH10g0972 . 9 1039 Primary Pumps ATPases(2) AT1G07670 65.7 0.0e+00 1304.3
HCH4g0577 . 1 1001 Primary Pumps ATPases(2) AT1G10130 83.1 0.0e+00 1632.1
HCH10g0972 . 2 1048 Primary Pumps ATPases(2) AT4G00900 77.6 0.0e+00 1608.6
HCH3g1300 . 22 1061 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1318.5
HCH5g0059 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 7.1e-58 219.9
HCH5g0791 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 7.1e-58 219.9
HCH7g0450 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.5 1.7e-269 924.9
HCH2g0574 . 1 485 Primary Pumps ATPases(2) AT1G76030 96.1 9.3e-268 919.1
HCH10g1051 . 1 88 Primary Pumps ATPases(2) AT1G76030 90.9 4.8e-38 156.0
HCH10g1103 . 1 375 Primary Pumps ATPases(2) AT1G12840 81.3 1.8e-178 622.1
HCH7g0068 . 1 260 Primary Pumps ATPases(2) AT3G58730 82.0 6.8e-116 413.7
HCH13g1155 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 2.9e-207 718.0
HCH4g0772 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0773 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0774 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
HCH12g0811 . 3 165 Primary Pumps ATPases(2) AT2G16510 94.5 1.9e-71 265.4
HCH7g0450 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 7.0e-271 929.5
HCH2g0574 . 1 488 Primary Pumps ATPases(2) AT4G38510 96.1 3.5e-270 927.2
HCH10g1051 . 1 88 Primary Pumps ATPases(2) AT4G38510 92.0 7.5e-39 158.7
HCH4g1835 . 1 183 Primary Pumps ATPases(2) AT1G64200 76.8 6.4e-71 263.8
HCH1g0343 . 1 183 Primary Pumps ATPases(2) AT1G64200 76.8 1.1e-70 263.1
HCH4g1852 . 1 183 Primary Pumps ATPases(2) AT1G64200 75.3 7.9e-69 256.9
HCH1g0194 . 1 127 Primary Pumps ATPases(2) AT1G64200 62.1 4.1e-41 164.9
HCH2g0574 . 12 485 Primary Pumps ATPases(2) AT1G20260 97.5 9.3e-268 919.1
HCH7g0450 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 7.9e-267 916.0
HCH2g1144 . 1 812 Primary Pumps ATPases(2) AT2G28520 80.7 0.0e+00 1333.9
HCH7g0534 . 12 815 Primary Pumps ATPases(2) AT2G28520 63.3 6.9e-300 1026.5
HCH4g0766 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-298 1022.3
HCH9g0213 . 1 351 Primary Pumps ATPases(2) AT3G28715 91.5 6.5e-191 663.3
HCH1g0343 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.8 4.6e-92 334.3
HCH4g1835 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 1.0e-91 333.2
HCH4g1852 . 1 219 Primary Pumps ATPases(2) AT4G11150 76.8 5.0e-86 314.3
HCH1g0194 . 1 144 Primary Pumps ATPases(2) AT4G11150 51.5 2.0e-42 169.5
HCH9g0940 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.4 0.0e+00 1171.0
HCH7g0450 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.5 1.7e-269 924.9
HCH2g0574 . 1 485 Primary Pumps ATPases(2) AT1G76030 96.1 9.3e-268 919.1
HCH10g1051 . 1 88 Primary Pumps ATPases(2) AT1G76030 90.9 4.8e-38 156.0
HCH7g0450 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 7.0e-271 929.5
HCH2g0574 . 1 488 Primary Pumps ATPases(2) AT4G38510 96.1 3.5e-270 927.2
HCH10g1051 . 1 88 Primary Pumps ATPases(2) AT4G38510 92.0 7.5e-39 158.7
HCH2g0574 . 12 485 Primary Pumps ATPases(2) AT1G20260 97.5 9.3e-268 919.1
HCH7g0450 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 7.9e-267 916.0
HCH10g1103 . 1 375 Primary Pumps ATPases(2) AT1G12840 81.3 1.8e-178 622.1
HCH7g0068 . 1 260 Primary Pumps ATPases(2) AT3G58730 82.0 6.8e-116 413.7
HCH1g0343 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.8 4.6e-92 334.3
HCH4g1835 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 1.0e-91 333.2
HCH4g1852 . 1 219 Primary Pumps ATPases(2) AT4G11150 76.8 5.0e-86 314.3
HCH1g0194 . 1 144 Primary Pumps ATPases(2) AT4G11150 51.5 2.0e-42 169.5
HCH1g0343 . 1 225 Primary Pumps ATPases(2) AT3G08560 69.7 4.3e-77 284.6
HCH4g1835 . 1 223 Primary Pumps ATPases(2) AT3G08560 70.3 5.6e-77 284.3
HCH4g1852 . 1 219 Primary Pumps ATPases(2) AT3G08560 68.4 4.9e-73 271.2
HCH4g1835 . 1 183 Primary Pumps ATPases(2) AT1G64200 76.8 6.4e-71 263.8
HCH1g0343 . 1 183 Primary Pumps ATPases(2) AT1G64200 76.8 1.1e-70 263.1
HCH4g1852 . 1 183 Primary Pumps ATPases(2) AT1G64200 75.3 7.9e-69 256.9
HCH1g0194 . 1 127 Primary Pumps ATPases(2) AT1G64200 62.1 4.1e-41 164.9
HCH5g0059 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 7.1e-58 219.9
HCH5g0791 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 7.1e-58 219.9
HCH13g1155 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.0 2.9e-207 718.0
HCH2g1144 . 1 812 Primary Pumps ATPases(2) AT2G28520 80.7 0.0e+00 1333.9
HCH7g0534 . 12 815 Primary Pumps ATPases(2) AT2G28520 63.3 6.9e-300 1026.5
HCH4g0766 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.1 1.3e-298 1022.3
HCH7g0534 . 6 820 Primary Pumps ATPases(2) AT2G21410 77.5 0.0e+00 1271.1
HCH4g0766 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.3 0.0e+00 1218.4
HCH2g1144 . 9 818 Primary Pumps ATPases(2) AT2G21410 61.9 2.1e-296 1015.0
HCH7g0534 . 1 820 Primary Pumps ATPases(2) AT4G39080 78.2 0.0e+00 1276.9
HCH4g0766 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.9 0.0e+00 1212.6
HCH2g1144 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.2 3.6e-296 1014.2
HCH4g0772 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH4g0773 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH4g0774 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.3e-60 229.2
HCH12g0811 . 28 165 Primary Pumps ATPases(2) AT4G34720 94.9 1.2e-58 222.6
HCH4g0772 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.5e-52 201.4
HCH4g0773 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.5e-52 201.4
HCH4g0774 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 3.3e-52 201.1
HCH12g0811 . 1 122 Primary Pumps ATPases(2) AT1G19910 93.4 1.4e-50 195.7
HCH4g0772 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH4g0773 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH4g0774 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.7e-60 227.6
HCH12g0811 . 28 165 Primary Pumps ATPases(2) AT4G38920 94.9 3.4e-58 221.1
HCH4g0774 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 7.7e-67 250.4
HCH4g0772 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 2.9e-66 248.4
HCH4g0773 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 2.9e-66 248.4
HCH12g0811 . 2 165 Primary Pumps ATPases(2) AT1G75630 77.3 1.2e-64 243.0
HCH4g0772 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0773 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 9.1e-74 273.1
HCH4g0774 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
HCH12g0811 . 3 165 Primary Pumps ATPases(2) AT2G16510 94.5 1.9e-71 265.4
HCH4g0410 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 7.3e-76 280.4
HCH12g0344 . 1 148 Primary Pumps ATPases(2) AT4G32530 52.4 1.7e-40 162.9
HCH4g0410 . 9 180 Primary Pumps ATPases(2) AT2G25610 84.3 3.8e-70 261.5
HCH12g0344 . 10 148 Primary Pumps ATPases(2) AT2G25610 58.5 3.4e-39 158.7
HCH9g0213 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.0 3.9e-199 690.6
HCH9g0213 . 1 351 Primary Pumps ATPases(2) AT3G28715 91.5 6.5e-191 663.3
HCH3g1300 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.9 0.0e+00 1684.5
HCH10g0972 . 9 1049 Primary Pumps ATPases(2) AT1G07810 65.0 0.0e+00 1302.3
HCH10g0972 . 2 1048 Primary Pumps ATPases(2) AT4G00900 77.6 0.0e+00 1608.6
HCH3g1300 . 22 1061 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1318.5
HCH4g0577 . 1 1001 Primary Pumps ATPases(2) AT1G10130 83.1 0.0e+00 1632.1
HCH3g1300 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.7 0.0e+00 1683.7
HCH10g0972 . 9 1039 Primary Pumps ATPases(2) AT1G07670 65.7 0.0e+00 1304.3
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000593 4 3 2 4 4 2 6 2 1 3 2 3 4 3 3 5 3 7 5 3 3 4 3 3 2 3 3 6 3 3 102