Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0779 ATGTTACTCAGTGATCAGATGGGTGTTCCAATGCCTCAGTTGTCACCAAATTTGAGTCCTGAAAACAGTAGGAGACCTGCTGGTATCCCTCCTTCTCACCCTAATAATCCGTTTTCGCCGCCGAGTTCGAATGCCATGCCGTCCCGATCGACCTCCTCCAGGCAATTGGGTGCTCAGAATTTGAGCCCAGGGTCCTTACATTCTAGGTCCTTGTCTCAACCCACTTTCTTTTCCCTTGATTCCCTTCCTCCCTTAAGCCCTTCGCCTTATCGAGAGAATACTTCTACGTTGTCCCCTTCTGACCAAGTTTTGATAGATGTGTCTATGGAAGATAGTGTTGCTAATTCTCATGCTCCGTCACTTCCTTCGCCTGGTACGAATGGTAAAGGATTATGGGTTGGTGAGGGTCTTCCTCCTCGTAGAGGACACAGACGGTCGAACAGTGATATTCCGTTGGGATTCTCTGCGATCATTCAGTCTTCACCTCAACTTGTTCCGATTGGGAATCAGAGGACTTTGGATTGGTTTGCGTCTGGCCGGGAGTATTTAGGAGTGGACAAAACAATTCAGGTTATGAAGCAGGATTTGGACAAGGATATGGACGTTAACAACAGTTCAGAAGGGATGGGTGAGAAGAAATTTGAGGTGGACAATGGAGACGATTTGTTTAGTGCTTATATGAATCTGGAAAACATTGATAAATTGAATTCATCTTGTACTGAAGACAATGATTTAGATAGCAAAGCCAGTGGCTCAAAGACAAATGGAGGAGAAAGCAGTGATACTGAAGTGGAAAGTTGCATAAATGCAAACTTGGGGGGAATCGATGTTTCAATTTCAAGTTCTGCTATTAGTAGGAGAGAAGGGGTGAAGAGAAGTGCTGGAGGAGATATTGCACGGCCTACAAGGCACTATAGAAGTCTTTCTATGGATAGTTACGTTGGAAGCTTGAATTTTGACAGCGAACCAAATAAACTCCTTCCCCTGGCGAATCAAGTAGGTCAACACTCACCTAGCAATTCAGTGGATGGGAACTCAACTAAGGTAAATATGGAGCTTGGAACTGGTGATTTTAGTGCAGTTGAGATAAAGAAGATCATGGAAAATGAGAAGCTTGCAGAGATTGCCGTATCAGATCCTAAACGTGCCAAAAGGATTTTGGCTAATCGTCAGTCAGCTGCACGTTCAAAGGAGCGGAAGATGCGATACATTGCAGAGTTGGAACACAAAGTGCAAACGTTGCAAACCGAAGCAACCACATTGTCTGCTCAGCTCACAAAATTGCAAAGAGATTCAATGGGACTGTCAGGTGAAAATAATGAACTGAAGTTTCGTGTTCAGGCCATGGAGCAACAAGCTCAACTCAAAGATGCTTTAAACGAGGCACTGTCTTCAGAGGTCCAGCGTTTGAAGGTTATAGCAGCAGAGCTAGGTGGCGAGGCTCACCTGTCGAGCCGCATGGCTCAGCAGCTCTCGATCAATCAACCGACAGGCCAGCTGCAGCATCAACAGTCCACCAAGTTCAACCTCTATCAGTTCCGCCACCAGCAGCCACCGCCGCCCAAGGAGAACGGTGACAATGCCAAGCCTGAGCTGAAACAATAA 1605 46.04 MLLSDQMGVPMPQLSPNLSPENSRRPAGIPPSHPNNPFSPPSSNAMPSRSTSSRQLGAQNLSPGSLHSRSLSQPTFFSLDSLPPLSPSPYRENTSTLSPSDQVLIDVSMEDSVANSHAPSLPSPGTNGKGLWVGEGLPPRRGHRRSNSDIPLGFSAIIQSSPQLVPIGNQRTLDWFASGREYLGVDKTIQVMKQDLDKDMDVNNSSEGMGEKKFEVDNGDDLFSAYMNLENIDKLNSSCTEDNDLDSKASGSKTNGGESSDTEVESCINANLGGIDVSISSSAISRREGVKRSAGGDIARPTRHYRSLSMDSYVGSLNFDSEPNKLLPLANQVGQHSPSNSVDGNSTKVNMELGTGDFSAVEIKKIMENEKLAEIAVSDPKRAKRILANRQSAARSKERKMRYIAELEHKVQTLQTEATTLSAQLTKLQRDSMGLSGENNELKFRVQAMEQQAQLKDALNEALSSEVQRLKVIAAELGGEAHLSSRMAQQLSINQPTGQLQHQQSTKFNLYQFRHQQPPPPKENGDNAKPELKQ 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5022896 5025616 + evm.model.ptg000015l.779 HCH4g0779 543023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0779 534 MobiDBLite consensus disorder prediction 42 72 - -
HCH4g0779 534 MobiDBLite consensus disorder prediction 238 263 - -
HCH4g0779 534 FunFam probable transcription factor PosF21 380 433 - -
HCH4g0779 534 CDD bZIP_plant_RF2 382 431 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0779 534 SMART brlzneu 377 441 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0779 534 MobiDBLite consensus disorder prediction 1 72 - -
HCH4g0779 534 MobiDBLite consensus disorder prediction 513 534 - -
HCH4g0779 534 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 379 442 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0779 534 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 116 520 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH4g0779 534 MobiDBLite consensus disorder prediction 78 97 - -
HCH4g0779 534 MobiDBLite consensus disorder prediction 114 148 - -
HCH4g0779 534 SUPERFAMILY Leucine zipper domain 381 432 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0779 534 Gene3D - 380 432 - -
HCH4g0779 534 Coils Coil 397 431 - -
HCH4g0779 534 Pfam bZIP transcription factor 381 435 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0709 HCH-Chr2:50833662 HCH4g0779 HCH-Chr4:5022896 2.20E-09 dispersed
HCH4g0779 HCH-Chr4:5022896 HCH7g0262 HCH-Chr7:1824321 8.70E-09 dispersed
HCH4g0779 HCH-Chr4:5022896 HCH7g0514 HCH-Chr7:3901214 1.30E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33477 PF00170 bZIP_1 4.70E-09 CL0018 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0779 - - - 0.0