Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0786 ATGTCGAACGCCGTCGAAGATCTCCGTCTCTCTCATCGCCCTTCTGAATTCCAATTTCAACTCCTTCATTCTCATTCTCGCGATATTTATTCTTCTTCTTCTTCTTCTTCTTCAGCTTTCAATCATCGTCATCATCCCGTGTCTTTTCTTGACCATTCTACTTTTCCTACTCCAACTCTCGATTTGAATCAAACATATGATATTAAAGATTCTGAGGCTCCGCCTATTAGACAACCTGTACCCTCTGAACTGAGGATTAGATCTAATGATTCTTCATGCGAAGCTGTATCTTGTGCAACTGGAATACAAAACAAAAAACCAAAGCTCCAGAAACAACCAAACTCTAGGACTCAAAGATCAATACCTGAGTCTCTTAATGGTCTAAATCCATCCACTAATGGTCGGTACGACAACTCACTAGGCTTCTTGACAAAAAGATTTATCAGGTTTGTTGCGGAGGCTGAGGATGGAACGCTTGATTTGAATAGAATTGCAAACGTATTAGAGGTTCAAAAGAGAAGGATTTATGACATAACGAATGTTCTGGAAGGAATAGGACTTGTGGTGAAAACTACAAAGAACCACATGCATTGGAAAGGATACGAGGGGGGCGGGACTCGGGAGCTCAATGATCAAGCTAACAGATTAAAGGATGAAGTTGAAAGTTTATATGCAGATGAACGCAGACTTGACGATCTGATAAGGAGGAAGCAAGAACTTTTGAGAGCTCTCGAGGAAAATGAAAGTTATAGAAAGAATCTTTTCGTAACAGAAGAAGACATCGTGCAGCTTCCTTGCTTCCAGAATCAGACACTTATAGCAGTTAAAGCCCCTCAAGCTAGTTATATTGAAGTTTCTGATCCGCATGAGGAGACTTGTTTTTCTGAGAGGCAGAGTAGAATGATCATTAAAAGCACCACTGGGCCAATTGATTTATACCTCTTGAGGAATGGAACACAACAGCATGGAGAAAGTACTTCCAATCAGGCGATACCTATGGATTCGGACGCAAGTTCCGAACAGCAGAGCAATCCTGACTCATCTAACAACAATTTTTGTCCTCCTTGCCAGGAGTTTAATGGGATTCAGAGAATTCAACCTTATTATAATAATATTGACAGTGATTATTGGTTTCAGTCAAATTCGCAAGTGAGCACTACACATTTATGGGGTGAGGAACATAACTTTTAA 1191 40.3 MSNAVEDLRLSHRPSEFQFQLLHSHSRDIYSSSSSSSSAFNHRHHPVSFLDHSTFPTPTLDLNQTYDIKDSEAPPIRQPVPSELRIRSNDSSCEAVSCATGIQNKKPKLQKQPNSRTQRSIPESLNGLNPSTNGRYDNSLGFLTKRFIRFVAEAEDGTLDLNRIANVLEVQKRRIYDITNVLEGIGLVVKTTKNHMHWKGYEGGGTRELNDQANRLKDEVESLYADERRLDDLIRRKQELLRALEENESYRKNLFVTEEDIVQLPCFQNQTLIAVKAPQASYIEVSDPHEETCFSERQSRMIIKSTTGPIDLYLLRNGTQQHGESTSNQAIPMDSDASSEQQSNPDSSNNNFCPPCQEFNGIQRIQPYYNNIDSDYWFQSNSQVSTTHLWGEEHNF 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5086366 5089720 - evm.model.ptg000015l.786 HCH4g0786 543030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0786 396 Pfam E2F transcription factor CC-MB domain 216 315 IPR032198 GO:0046983(InterPro)
HCH4g0786 396 Gene3D - 129 202 IPR036388 -
HCH4g0786 396 SMART E2F_TDP_2 135 200 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH4g0786 396 Pfam E2F/DP family winged-helix DNA-binding domain 137 200 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH4g0786 396 Gene3D - 206 317 - -
HCH4g0786 396 CDD E2F_DD 211 315 IPR032198 GO:0046983(InterPro)
HCH4g0786 396 MobiDBLite consensus disorder prediction 321 353 - -
HCH4g0786 396 FunFam E2F transcription factor 1 129 202 - -
HCH4g0786 396 MobiDBLite consensus disorder prediction 104 132 - -
HCH4g0786 396 PANTHER TRANSCRIPTION FACTOR E2F 98 391 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
HCH4g0786 396 SUPERFAMILY Winged helix DNA-binding domain 135 198 IPR036390 -
HCH4g0786 396 SUPERFAMILY E2F-DP heterodimerization region 212 316 IPR037241 -
HCH4g0786 396 Coils Coil 206 250 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0786 K06620 - - csv:101211469 456.832
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1292 HCH-Chr2:55039466 HCH4g0786 HCH-Chr4:5086366 4.80E-56 dispersed
HCH3g0306 HCH-Chr3:1929942 HCH4g0786 HCH-Chr4:5086366 1.20E-07 dispersed
HCH4g0786 HCH-Chr4:5086366 HCH9g0455 HCH-Chr9:2913522 1.40E-56 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH3g0306 . 3 375 E2F-DP Transcription Factor Family AT3G48160 57.8 6.2e-108 387.9
HCH11g1000 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 5.0e-59 224.9
HCH2g1292 . 14 457 E2F-DP Transcription Factor Family AT2G36010 52.5 5.1e-117 418.3
HCH9g0455 . 14 433 E2F-DP Transcription Factor Family AT2G36010 55.1 2.5e-116 416.0
HCH2g1292 . 22 462 E2F-DP Transcription Factor Family AT5G22220 55.8 2.3e-114 409.5
HCH4g0786 . 127 390 E2F-DP Transcription Factor Family AT1G47870 51.3 2.4e-64 243.0
HCH11g1000 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 5.0e-59 224.9
HCH2g1292 . 22 462 E2F-DP Transcription Factor Family AT5G22220 55.8 2.3e-114 409.5
HCH2g1292 . 14 457 E2F-DP Transcription Factor Family AT2G36010 52.5 5.1e-117 418.3
HCH9g0455 . 14 433 E2F-DP Transcription Factor Family AT2G36010 55.1 2.5e-116 416.0
HCH4g0786 . 127 390 E2F-DP Transcription Factor Family AT1G47870 51.3 2.4e-64 243.0
HCH3g0306 . 3 375 E2F-DP Transcription Factor Family AT3G48160 57.8 6.2e-108 387.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33478 PF16421 E2F_CC-MB 5.90E-26 No_clan HCH TF