Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH4g0786 | ATGTCGAACGCCGTCGAAGATCTCCGTCTCTCTCATCGCCCTTCTGAATTCCAATTTCAACTCCTTCATTCTCATTCTCGCGATATTTATTCTTCTTCTTCTTCTTCTTCTTCAGCTTTCAATCATCGTCATCATCCCGTGTCTTTTCTTGACCATTCTACTTTTCCTACTCCAACTCTCGATTTGAATCAAACATATGATATTAAAGATTCTGAGGCTCCGCCTATTAGACAACCTGTACCCTCTGAACTGAGGATTAGATCTAATGATTCTTCATGCGAAGCTGTATCTTGTGCAACTGGAATACAAAACAAAAAACCAAAGCTCCAGAAACAACCAAACTCTAGGACTCAAAGATCAATACCTGAGTCTCTTAATGGTCTAAATCCATCCACTAATGGTCGGTACGACAACTCACTAGGCTTCTTGACAAAAAGATTTATCAGGTTTGTTGCGGAGGCTGAGGATGGAACGCTTGATTTGAATAGAATTGCAAACGTATTAGAGGTTCAAAAGAGAAGGATTTATGACATAACGAATGTTCTGGAAGGAATAGGACTTGTGGTGAAAACTACAAAGAACCACATGCATTGGAAAGGATACGAGGGGGGCGGGACTCGGGAGCTCAATGATCAAGCTAACAGATTAAAGGATGAAGTTGAAAGTTTATATGCAGATGAACGCAGACTTGACGATCTGATAAGGAGGAAGCAAGAACTTTTGAGAGCTCTCGAGGAAAATGAAAGTTATAGAAAGAATCTTTTCGTAACAGAAGAAGACATCGTGCAGCTTCCTTGCTTCCAGAATCAGACACTTATAGCAGTTAAAGCCCCTCAAGCTAGTTATATTGAAGTTTCTGATCCGCATGAGGAGACTTGTTTTTCTGAGAGGCAGAGTAGAATGATCATTAAAAGCACCACTGGGCCAATTGATTTATACCTCTTGAGGAATGGAACACAACAGCATGGAGAAAGTACTTCCAATCAGGCGATACCTATGGATTCGGACGCAAGTTCCGAACAGCAGAGCAATCCTGACTCATCTAACAACAATTTTTGTCCTCCTTGCCAGGAGTTTAATGGGATTCAGAGAATTCAACCTTATTATAATAATATTGACAGTGATTATTGGTTTCAGTCAAATTCGCAAGTGAGCACTACACATTTATGGGGTGAGGAACATAACTTTTAA | 1191 | 40.3 | MSNAVEDLRLSHRPSEFQFQLLHSHSRDIYSSSSSSSSAFNHRHHPVSFLDHSTFPTPTLDLNQTYDIKDSEAPPIRQPVPSELRIRSNDSSCEAVSCATGIQNKKPKLQKQPNSRTQRSIPESLNGLNPSTNGRYDNSLGFLTKRFIRFVAEAEDGTLDLNRIANVLEVQKRRIYDITNVLEGIGLVVKTTKNHMHWKGYEGGGTRELNDQANRLKDEVESLYADERRLDDLIRRKQELLRALEENESYRKNLFVTEEDIVQLPCFQNQTLIAVKAPQASYIEVSDPHEETCFSERQSRMIIKSTTGPIDLYLLRNGTQQHGESTSNQAIPMDSDASSEQQSNPDSSNNNFCPPCQEFNGIQRIQPYYNNIDSDYWFQSNSQVSTTHLWGEEHNF | 396 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5086366 | 5089720 | - | evm.model.ptg000015l.786 | HCH4g0786 | 543030 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH4g0786 | 396 | Pfam | E2F transcription factor CC-MB domain | 216 | 315 | IPR032198 | GO:0046983(InterPro) | |
HCH4g0786 | 396 | Gene3D | - | 129 | 202 | IPR036388 | - | |
HCH4g0786 | 396 | SMART | E2F_TDP_2 | 135 | 200 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
HCH4g0786 | 396 | Pfam | E2F/DP family winged-helix DNA-binding domain | 137 | 200 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
HCH4g0786 | 396 | Gene3D | - | 206 | 317 | - | - | |
HCH4g0786 | 396 | CDD | E2F_DD | 211 | 315 | IPR032198 | GO:0046983(InterPro) | |
HCH4g0786 | 396 | MobiDBLite | consensus disorder prediction | 321 | 353 | - | - | |
HCH4g0786 | 396 | FunFam | E2F transcription factor 1 | 129 | 202 | - | - | |
HCH4g0786 | 396 | MobiDBLite | consensus disorder prediction | 104 | 132 | - | - | |
HCH4g0786 | 396 | PANTHER | TRANSCRIPTION FACTOR E2F | 98 | 391 | IPR015633 | GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER) | |
HCH4g0786 | 396 | SUPERFAMILY | Winged helix DNA-binding domain | 135 | 198 | IPR036390 | - | |
HCH4g0786 | 396 | SUPERFAMILY | E2F-DP heterodimerization region | 212 | 316 | IPR037241 | - | |
HCH4g0786 | 396 | Coils | Coil | 206 | 250 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g1292 | HCH-Chr2:55039466 | HCH4g0786 | HCH-Chr4:5086366 | 4.80E-56 | dispersed | |
HCH3g0306 | HCH-Chr3:1929942 | HCH4g0786 | HCH-Chr4:5086366 | 1.20E-07 | dispersed | |
HCH4g0786 | HCH-Chr4:5086366 | HCH9g0455 | HCH-Chr9:2913522 | 1.40E-56 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33478 | PF16421 | E2F_CC-MB | 5.90E-26 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH4g0786 | K06620 | - | csv:101211469 | 456.832 |