Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0786 ATGTCGAACGCCGTCGAAGATCTCCGTCTCTCTCATCGCCCTTCTGAATTCCAATTTCAACTCCTTCATTCTCATTCTCGCGATATTTATTCTTCTTCTTCTTCTTCTTCTTCAGCTTTCAATCATCGTCATCATCCCGTGTCTTTTCTTGACCATTCTACTTTTCCTACTCCAACTCTCGATTTGAATCAAACATATGATATTAAAGATTCTGAGGCTCCGCCTATTAGACAACCTGTACCCTCTGAACTGAGGATTAGATCTAATGATTCTTCATGCGAAGCTGTATCTTGTGCAACTGGAATACAAAACAAAAAACCAAAGCTCCAGAAACAACCAAACTCTAGGACTCAAAGATCAATACCTGAGTCTCTTAATGGTCTAAATCCATCCACTAATGGTCGGTACGACAACTCACTAGGCTTCTTGACAAAAAGATTTATCAGGTTTGTTGCGGAGGCTGAGGATGGAACGCTTGATTTGAATAGAATTGCAAACGTATTAGAGGTTCAAAAGAGAAGGATTTATGACATAACGAATGTTCTGGAAGGAATAGGACTTGTGGTGAAAACTACAAAGAACCACATGCATTGGAAAGGATACGAGGGGGGCGGGACTCGGGAGCTCAATGATCAAGCTAACAGATTAAAGGATGAAGTTGAAAGTTTATATGCAGATGAACGCAGACTTGACGATCTGATAAGGAGGAAGCAAGAACTTTTGAGAGCTCTCGAGGAAAATGAAAGTTATAGAAAGAATCTTTTCGTAACAGAAGAAGACATCGTGCAGCTTCCTTGCTTCCAGAATCAGACACTTATAGCAGTTAAAGCCCCTCAAGCTAGTTATATTGAAGTTTCTGATCCGCATGAGGAGACTTGTTTTTCTGAGAGGCAGAGTAGAATGATCATTAAAAGCACCACTGGGCCAATTGATTTATACCTCTTGAGGAATGGAACACAACAGCATGGAGAAAGTACTTCCAATCAGGCGATACCTATGGATTCGGACGCAAGTTCCGAACAGCAGAGCAATCCTGACTCATCTAACAACAATTTTTGTCCTCCTTGCCAGGAGTTTAATGGGATTCAGAGAATTCAACCTTATTATAATAATATTGACAGTGATTATTGGTTTCAGTCAAATTCGCAAGTGAGCACTACACATTTATGGGGTGAGGAACATAACTTTTAA 1191 40.3 MSNAVEDLRLSHRPSEFQFQLLHSHSRDIYSSSSSSSSAFNHRHHPVSFLDHSTFPTPTLDLNQTYDIKDSEAPPIRQPVPSELRIRSNDSSCEAVSCATGIQNKKPKLQKQPNSRTQRSIPESLNGLNPSTNGRYDNSLGFLTKRFIRFVAEAEDGTLDLNRIANVLEVQKRRIYDITNVLEGIGLVVKTTKNHMHWKGYEGGGTRELNDQANRLKDEVESLYADERRLDDLIRRKQELLRALEENESYRKNLFVTEEDIVQLPCFQNQTLIAVKAPQASYIEVSDPHEETCFSERQSRMIIKSTTGPIDLYLLRNGTQQHGESTSNQAIPMDSDASSEQQSNPDSSNNNFCPPCQEFNGIQRIQPYYNNIDSDYWFQSNSQVSTTHLWGEEHNF 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5086366 5089720 - evm.model.ptg000015l.786 HCH4g0786 543030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0786 396 Pfam E2F transcription factor CC-MB domain 216 315 IPR032198 GO:0046983(InterPro)
HCH4g0786 396 Gene3D - 129 202 IPR036388 -
HCH4g0786 396 SMART E2F_TDP_2 135 200 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH4g0786 396 Pfam E2F/DP family winged-helix DNA-binding domain 137 200 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
HCH4g0786 396 Gene3D - 206 317 - -
HCH4g0786 396 CDD E2F_DD 211 315 IPR032198 GO:0046983(InterPro)
HCH4g0786 396 MobiDBLite consensus disorder prediction 321 353 - -
HCH4g0786 396 FunFam E2F transcription factor 1 129 202 - -
HCH4g0786 396 MobiDBLite consensus disorder prediction 104 132 - -
HCH4g0786 396 PANTHER TRANSCRIPTION FACTOR E2F 98 391 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
HCH4g0786 396 SUPERFAMILY Winged helix DNA-binding domain 135 198 IPR036390 -
HCH4g0786 396 SUPERFAMILY E2F-DP heterodimerization region 212 316 IPR037241 -
HCH4g0786 396 Coils Coil 206 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1292 HCH-Chr2:55039466 HCH4g0786 HCH-Chr4:5086366 4.80E-56 dispersed
HCH3g0306 HCH-Chr3:1929942 HCH4g0786 HCH-Chr4:5086366 1.20E-07 dispersed
HCH4g0786 HCH-Chr4:5086366 HCH9g0455 HCH-Chr9:2913522 1.40E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33478 PF16421 E2F_CC-MB 5.90E-26 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0786 K06620 - csv:101211469 456.832