Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0796 ATGGCGTGTTTCTTACTATCTCTATTAGCACTACTACTTCTTTCCACTTCAGGCGTGATTTCCACAACCTTCACTTTCGTAAACAAATGCGATTTTACGGTCTGGCCGGGAATTCTATCAAACGGCGGCGTACCACCGCTTTCCACCACCGGCTTCTCTCTCCAAACCGGAGAATCCAAATCCCTCACGGCGCCGACTTCATGGGGCGGTCGTTTCTGGGGTCGAACGTTTTGCTCCGAAGATTCCACAGGAAAATTCTCTTGTATTACCGGCGATTGTGGCTCCAACAAACTAGAGTGCGCCGGAAATGGAGCCACCCCACCGGCTACTCTAGCTGAGTTCACTCTCGACGGCTCCGGTGGTCTTGATTTCTTTGATGTCAGTCTCGTCGACGGTTATAACCTCCCTATGATGGTGGTACCGCACGGTGGCACCGGAGATAATTGTACGAACACCGGCTGCGTGGTGGATCTAAACGGCGCGTGTCCTTCAGAACTTCGGATGTCGAGTGTGGACGGGAAAGAGGGTGTCGCGTGTAAGAGCGCGTGCGGTGCTTTTAACCAGCCACAATATTGTTGCACGGGCGCGTATCAGACACCCGATACTTGTAAACCGTCGACGTACTCGCAGATATTCAAGAACGCTTGCCCACGCGCTTACAGCTACGCGTACGATGATAAAACGAGCACATTTACATGTGCTTCTGCTTCTGATTATATGATCACCTTCTGTCCCTCTCCAAACACCAGTCAAAAATCTTCAGAGTCGCAGAACTCACAAGGGACGGTAAAGGCATCTCCGGACGAGAGCACAATGGTATACGAAGGTGCTTCCCTTATGGCAAGCGAGGCACGGCCATCCACACGGGGGCACGTGATCGGACAAAACGCCGTCGTTTGTGCGGTGGCAGTGTGGTGGCTATGGCGGTTGTTGTAA 936 52.35 MACFLLSLLALLLLSTSGVISTTFTFVNKCDFTVWPGILSNGGVPPLSTTGFSLQTGESKSLTAPTSWGGRFWGRTFCSEDSTGKFSCITGDCGSNKLECAGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMMVVPHGGTGDNCTNTGCVVDLNGACPSELRMSSVDGKEGVACKSACGAFNQPQYCCTGAYQTPDTCKPSTYSQIFKNACPRAYSYAYDDKTSTFTCASASDYMITFCPSPNTSQKSSESQNSQGTVKASPDESTMVYEGASLMASEARPSTRGHVIGQNAVVCAVAVWWLWRLL 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5143232 5144657 + evm.model.ptg000015l.796 HCH4g0796 543040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0796 311 Pfam Thaumatin family 28 245 IPR001938 -
HCH4g0796 311 Gene3D Thaumatin 22 245 IPR037176 -
HCH4g0796 311 MobiDBLite consensus disorder prediction 249 269 - -
HCH4g0796 311 ProSiteProfiles Thaumatin family profile. 21 245 IPR001938 -
HCH4g0796 311 SMART tha2 24 245 IPR001938 -
HCH4g0796 311 PANTHER OS03G0233200 PROTEIN 8 245 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
HCH4g0796 311 MobiDBLite consensus disorder prediction 249 267 - -
HCH4g0796 311 PIRSF PR5 1 286 IPR001938 -
HCH4g0796 311 SUPERFAMILY Osmotin, thaumatin-like protein 22 246 IPR037176 -
HCH4g0796 311 FunFam THAUMATIN-LIKE PROTEIN 1 22 245 - -
HCH4g0796 311 PRINTS Pathogenesis-related protein signature 123 139 IPR001938 -
HCH4g0796 311 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
HCH4g0796 311 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
HCH4g0796 311 PRINTS Pathogenesis-related protein signature 235 244 IPR001938 -
HCH4g0796 311 CDD TLP-PA 23 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0796 HCH-Chr4:5143232 HCH9g0545 HCH-Chr9:3566165 7.20E-72 dispersed
HCH4g0796 HCH-Chr4:5143232 HCH4g0797 HCH-Chr4:5150121 1.60E-79 tandem
HCH13g1369 HCH-Chr13:41593146 HCH4g0796 HCH-Chr4:5143232 2.70E-68 transposed
HCH12g0114 HCH-Chr12:608954 HCH4g0796 HCH-Chr4:5143232 1.10E-122 wgd
HCH14g0652 HCH-Chr14:35186654 HCH4g0796 HCH-Chr4:5143232 4.30E-90 wgd
HCH2g0536 HCH-Chr2:49169399 HCH4g0796 HCH-Chr4:5143232 1.80E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0796 - - - 0.0