Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0812 ATGACGATTATGTTTGTGTTTTCCCTTTTGATTGTTTTTTTACTAGTTTGTTCTTTGAATGCATTGAGCTTGAACTACTACGACAGTACGTGCCCTCATCTCGAGTCGATCGTCGCCAAGGAAGTTAGATTAGCCACTTTGAATGACAAGACAGTGCCTGCTGCGCTGCTTAGAATGCATTTTCATGATTGTTTCATCAGAGGTTGTGATGGTTCTGTGCTTTTAGACTCGAAGGGAAAGAACACTGCAGAAAAGGATGGCCCTCCCAACATATCATTGCATGCATTTTATGTCATTGACAATGCGAAGAAGGCGATCGAATCGTCGTGCCCTGGCGTCGTTTCTTGTGCTGATATCTTGGCCCTTGCTGCACGTGATGCCGTTGTTGTGTCTGGAGGTCCCCAATGGGATGTTCCAAAAGGAAGAAAAGATGGAAGAATCTCAAAGGCGAGCGAAACAAGACAGTTGCCTGCTCCCACCTTCAACTTCTCTCAACTCCAACAAAGTTTCTCCCAAAGAGGCCTTTCTGTAGAAGATCTTGTCGCTCTTTCAGGAGGCCACACTCTTGGATTCGCCCACTGCTCATCATTCCAGAATAGAATTCACAGTTTCAACTCGAGCCTCGATATCGATCCATCGCTGCATCCAGCTTTCGCAGCCAGCCTGCAGAGCGTATGTCCTGCACACAACAAAGTGAAAAGCGCAGGCTCTCCTTTGGACTCAACTTCTACAGTATTCGATAATGCATATTTCAAACTACTCCTTCAAGGACAGAGCATTTTTTCTTCTGATCAATCCCTTCTTACGACTCTCAAAACCAAGGCTTTAGTTTCTAAGTTTGCTGATAAAAAACACCTCTTTGAGAAGGCTTTTGTGAAGTCTATGGTCAAGATGAGTAGCATTGCTGGTGCTGGCCAAGATATCAGGCTCAATTGTAGGGTGGTGAGATAA 951 44.79 MTIMFVFSLLIVFLLVCSLNALSLNYYDSTCPHLESIVAKEVRLATLNDKTVPAALLRMHFHDCFIRGCDGSVLLDSKGKNTAEKDGPPNISLHAFYVIDNAKKAIESSCPGVVSCADILALAARDAVVVSGGPQWDVPKGRKDGRISKASETRQLPAPTFNFSQLQQSFSQRGLSVEDLVALSGGHTLGFAHCSSFQNRIHSFNSSLDIDPSLHPAFAASLQSVCPAHNKVKSAGSPLDSTSTVFDNAYFKLLLQGQSIFSSDQSLLTTLKTKALVSKFADKKHLFEKAFVKSMVKMSSIAGAGQDIRLNCRVVR 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5229906 5231380 - evm.model.ptg000015l.812 HCH4g0812 543056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0812 316 Gene3D Peroxidase, domain 2 157 298 - -
HCH4g0812 316 SUPERFAMILY Heme-dependent peroxidases 22 315 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0812 316 CDD secretory_peroxidase 22 315 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH4g0812 316 FunFam Peroxidase 25 163 - -
HCH4g0812 316 FunFam Peroxidase 157 298 - -
HCH4g0812 316 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0812 316 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0812 316 PRINTS Haem peroxidase superfamily signature 179 194 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0812 316 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0812 316 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0812 316 ProSitePatterns Peroxidases proximal heme-ligand signature. 179 189 IPR019793 -
HCH4g0812 316 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0812 316 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0812 316 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0812 316 PRINTS Plant peroxidase signature 178 190 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0812 316 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0812 316 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0812 316 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0812 316 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0812 316 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0812 316 ProSiteProfiles Plant heme peroxidase family profile. 21 316 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0812 316 Pfam Peroxidase 38 282 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH4g0812 316 PANTHER PEROXIDASE 25-RELATED 17 312 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
HCH4g0812 316 Gene3D - 25 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0812 HCH-Chr4:5229906 HCH4g1118 HCH-Chr4:7301568 8.30E-68 dispersed
HCH11g1181 HCH-Chr11:44145788 HCH4g0812 HCH-Chr4:5229906 4.70E-95 transposed
HCH14g0031 HCH-Chr14:3070299 HCH4g0812 HCH-Chr4:5229906 4.30E-70 transposed
HCH14g0676 HCH-Chr14:35297952 HCH4g0812 HCH-Chr4:5229906 1.60E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0812 K00430 - csv:101214403 529.25