Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0813 ATGGAGAAAATCCTTTTTGCATTAGGTCTCTGCAACTTCTTCTTCTTCTTCAATGTCAATGCATTTACGGCCGCGGGATGGACTCAAGCTCATGCCACCTTTTATGGCGGAAGTGACGCCTCAGGCACAATGGGTGGAGCTTGTGGATATGGAAACTTGTACCAAACGGGGTATGGAACAAGCACTGCAGCTTTAAGCACAGCCTTGTTTAACGATGGAGGTTCATGTGGGCAGTGCTTCAAGATCACGTGTGATTCTAAAACAGACCCAAGATGGTGTGTAAAAGGAGCCTCAGTGATTATAACAGCCACAAACTTTTGCCCTCCCAATTATGCCCTTCCTAATAACGATGGAGGTTGGTGTAATCCACCCCTTAAGCACTTTGACATGGCTCAGCCTGCTTGGGAGAAGATTGGCATTTACAGGGGTGGAATTGTCCCTGTTCTCTACCAAAGGGTTCCTTGCGTAACAAAGGGAGGTGTAAGATTCACAGTAAACGGGAGAGATTATTTTGAGCTAGTTTTAATCAGCAACGTTGGAGGAGCAGGATCCATTAAATCAGTCTCAATCAAAGGCTCTAAATCCAATCTGATGCCAATGTCAAGAAATTGGGGTGCCAATTGGCAGTCAAATTCTTATCTAAACGGCCAATCTCTGTCCTTCACCATCACTACTAGCGACGGACAGACCCTTGTTTTTAAGGACATCGTGCCCTCCAATTGGAAGTTTGGCCAAACATTTACAAGCAAACTTCAATTCAGCTGA 765 45.1 MEKILFALGLCNFFFFFNVNAFTAAGWTQAHATFYGGSDASGTMGGACGYGNLYQTGYGTSTAALSTALFNDGGSCGQCFKITCDSKTDPRWCVKGASVIITATNFCPPNYALPNNDGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLYQRVPCVTKGGVRFTVNGRDYFELVLISNVGGAGSIKSVSIKGSKSNLMPMSRNWGANWQSNSYLNGQSLSFTITTSDGQTLVFKDIVPSNWKFGQTFTSKLQFS 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5240094 5241213 - evm.model.ptg000015l.813 HCH4g0813 543057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0813 254 PANTHER EXPANSIN-A15 16 250 IPR002963 GO:0009664(InterPro)
HCH4g0813 254 FunFam Expansin 160 253 - -
HCH4g0813 254 Pfam Expansin C-terminal domain 161 238 IPR007117 -
HCH4g0813 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 160 IPR007112 -
HCH4g0813 254 SMART dpbb_1 62 150 IPR007112 -
HCH4g0813 254 FunFam Expansin 17 156 - -
HCH4g0813 254 Gene3D - 16 155 IPR036908 -
HCH4g0813 254 Pfam Lytic transglycolase 62 150 IPR009009 -
HCH4g0813 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
HCH4g0813 254 SUPERFAMILY PHL pollen allergen 158 249 IPR036749 -
HCH4g0813 254 CDD DPBB_EXPA_N 26 155 - -
HCH4g0813 254 Gene3D - 160 254 IPR036749 -
HCH4g0813 254 PRINTS Expansin signature 206 227 IPR002963 GO:0009664(InterPro)
HCH4g0813 254 PRINTS Expansin signature 235 251 IPR002963 GO:0009664(InterPro)
HCH4g0813 254 PRINTS Expansin signature 118 135 IPR002963 GO:0009664(InterPro)
HCH4g0813 254 PRINTS Expansin signature 171 192 IPR002963 GO:0009664(InterPro)
HCH4g0813 254 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
HCH4g0813 254 PRINTS Expansin signature 135 148 IPR002963 GO:0009664(InterPro)
HCH4g0813 254 PRINTS Expansin signature 159 171 IPR002963 GO:0009664(InterPro)
HCH4g0813 254 PRINTS Expansin signature 99 109 IPR002963 GO:0009664(InterPro)
HCH4g0813 254 PRINTS Expansin signature 86 97 IPR002963 GO:0009664(InterPro)
HCH4g0813 254 SUPERFAMILY Barwin-like endoglucanases 15 178 IPR036908 -
HCH4g0813 254 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576(InterPro)
HCH4g0813 254 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576(InterPro)
HCH4g0813 254 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576(InterPro)
HCH4g0813 254 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
HCH4g0813 254 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
HCH4g0813 254 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0813 HCH-Chr4:5240094 HCH4g0896 HCH-Chr4:5762602 3.20E-94 dispersed
HCH4g0813 HCH-Chr4:5240094 HCH1g0914 HCH-Chr1:57522355 1.30E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0813 - - - 0.0