Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0820 ATGGACGGTTCAGATTCAGAGGCGTTAGTTTACGTTCACGGCGATCTTGATTTGAAAATAATCGAAGCTCGTCGTTTGCCTAATATGGATTTGTTGACAGAGCGTATGCGTCGATTGTTTACCGTTTTTGATTCTTGTAGAAAACCGTTTTCCAAAAAAGCTAAACATGAACATCCTCATAAAATCATCACCAGCGATCCTTACGTCACGGTTTGTCTCGCCGGAGCTACCGTCGCTCGCACGCGCGTTATTTCGAATTCTCAAAACCCTAGCTGGAACGAACATTTCAAGATTCATCTTGCTCATCCGGTGACGGAAGTTGAATTTCATGTCAAAGATAATGATGTCTTTGGCGCTGATTTGATCGGAATCGCTACGGTCTCTGCACGGAGAATCATTTCTGGTGAGGTTATTAATGATTGGTTTCCGATTATTGGTTCGTTTGGGAAACCGCCGAAACCTGATTCGGCTGTACGATTGGAGATGAGATTTACTAAATGTGAGGATAATCCTTTCTACCGGTACGGCATTGCTGCCGATCCGGAACATTTCGGTATTCGGAATTGTTATTTTCCGGTGCGGCGGGGAGGGTCGGTGACGCTTTATCAGGATGCTCATGTTCCTGATTCAATGTTGGAGAAAGTTGAATTGGAAGAAGGGAATGTGTATCAAAATGAGAATTGTTGGGAGGATATATGTCATGCTATTTTGGAGGCTCATCATTTAGTGTATATAACTGGTTGGTCGATATTTCATAAGGTGAAGCTTGTGAGAGAACCTTCAAAGCCGTTGCCTAATGGCGGGGATTTGAATTTGGGAGAGTTGCTGAAGTATAAATCAGAAGAAGGGGTGCGAGTTTTGTTATTGGTTTGGGATGATAAGACTTCCCATAGCAAGTTCTTCATCAATACGGCTGGAGTGATGCAGACTCATGATGAGGAGACTCGAAAGTTTTTCAAGCATTCTTCTGTCACGTGCGTGCTATCACCCCGATATGCCAGCAGTAAGCTTAGCATTTTTAAGCAACAGGTTGTTGGAACCCTTTTTACTCATCACCAGAAGTGTGTGCTTGTGGATACACAAGCATCTGGAAATTACCGGAAGATAAGTGCTTTTATGGGAGGTCTTGATCTTTGTGATGGTCGGTATGATACTCCCCAGCATAGATTATTCCAAGATCTTGACACTGTATTCAATGATGATTTTCACAATCCAACTTTTTCTGGTGGTACGAAAGGTCCTAGGCAGCCATGGCATGATTTACATTGCAAAGTTGAAGGTCCTGCTGCATACGATGTGCTTACTAACTTTGAACAAAGATGGCGAAAAGCCACAAAATGGTCTGAAATAGGTCAGCGTTTCAAAAGAGTGTCACATTGGCATGAAGATGCATTAATAAAGTTGGAACGCATATCTTGGATACTCAGTCCATCTCGATCAATCCCCAGTGATGATCCTTTATTATGGGTTTCCAAGGAAAATGATTCTGAAAATTGGAATGTTCAGGTTTTCCGATCCATAGATTCAGGATCATTAAAAGGATTTCCCAAAGATGTTTTCCAAGCTGAGTTGATGAACCTTGTTTGTGCCAAAAATTTGGTCATTGACAAAAGCATTCAAACAGCATATATCGAAGCAATAAGATCTGCCCAGCACTTCATATACATTGAGAATCAGTATTTTATTGGATCATCGTTTGCATGGCCTTCATATAAAGAAGCAGGTGCTGATAATCTAATTCCTTTGGAGTTGGCATTGAAGATTGCTAGTAAGATAAGGGCCAATGAGAGGTTTAGTGTGTACATTGTGATACCAATGTGGCCTGAAGGCGTTCCCACTTCTGCTTCTGTCCAAGAAATCCTCTTTTGGCAGGGTCAGACAATGCAAATGATGTATGAAGTCATTGGACGAGAGTTGAAATATATGAATCTCGAGAATTCCCATCCCCAGGACTATTTAAACTTTTACTGTCTTGGAAACAGGGAACAACTGCAACAGGACTTGTCATGTTCCTCTACTAGTAATTCTTCTAAGAACGAAGATGCGGTTTCAGACTCCCAAAAGTTTCGTCGGTTCATGATATACGTGCATGCCAAAGGAATGGTAGTTGATGATGAGTACATCATAATAGGGTCTGCAAATATAAATCAAAGATCAATGGCTGGTTCAAGGGACACTGAGATTGCCATGGGTGCGTATCAACCCCATCACACATGGGGTAAGAAGAAACGACATCCACGTGGCCAGGTTTACGGGTATAGAATGTCGCTCTGGGCTGAACATATGGGAATGATTGATGGTTACTTCAAGGAGCCTGAAAGTTTGGCTTGTGTTAAAACAGTTAACAAAATAGCTGATGATAACTGGAAGAAATATACAGCAGAGGATTTTGCGCCATTGCAAGGGCACCTCCTTAAATATCCAATTGAGGTAGATTCAAGTGGCAAGATGGGCCCCTTGAACGGACAAGAGACCTTCCCAGACGTGGGTGGTAAGGTTCTTGGAGCTCGATCTAATCTTCCTGATGCTTTAACTACATAA 2541 42.11 MDGSDSEALVYVHGDLDLKIIEARRLPNMDLLTERMRRLFTVFDSCRKPFSKKAKHEHPHKIITSDPYVTVCLAGATVARTRVISNSQNPSWNEHFKIHLAHPVTEVEFHVKDNDVFGADLIGIATVSARRIISGEVINDWFPIIGSFGKPPKPDSAVRLEMRFTKCEDNPFYRYGIAADPEHFGIRNCYFPVRRGGSVTLYQDAHVPDSMLEKVELEEGNVYQNENCWEDICHAILEAHHLVYITGWSIFHKVKLVREPSKPLPNGGDLNLGELLKYKSEEGVRVLLLVWDDKTSHSKFFINTAGVMQTHDEETRKFFKHSSVTCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVLVDTQASGNYRKISAFMGGLDLCDGRYDTPQHRLFQDLDTVFNDDFHNPTFSGGTKGPRQPWHDLHCKVEGPAAYDVLTNFEQRWRKATKWSEIGQRFKRVSHWHEDALIKLERISWILSPSRSIPSDDPLLWVSKENDSENWNVQVFRSIDSGSLKGFPKDVFQAELMNLVCAKNLVIDKSIQTAYIEAIRSAQHFIYIENQYFIGSSFAWPSYKEAGADNLIPLELALKIASKIRANERFSVYIVIPMWPEGVPTSASVQEILFWQGQTMQMMYEVIGRELKYMNLENSHPQDYLNFYCLGNREQLQQDLSCSSTSNSSKNEDAVSDSQKFRRFMIYVHAKGMVVDDEYIIIGSANINQRSMAGSRDTEIAMGAYQPHHTWGKKKRHPRGQVYGYRMSLWAEHMGMIDGYFKEPESLACVKTVNKIADDNWKKYTAEDFAPLQGHLLKYPIEVDSSGKMGPLNGQETFPDVGGKVLGARSNLPDALTT 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5270106 5275898 + evm.model.ptg000015l.820 HCH4g0820 543064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0820 846 Pfam Phospholipase D Active site motif 694 719 IPR001736 GO:0003824(InterPro)
HCH4g0820 846 SUPERFAMILY Phospholipase D/nuclease 199 451 - -
HCH4g0820 846 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 347 382 IPR001736 GO:0003824(InterPro)
HCH4g0820 846 FunFam Phospholipase D delta 219 462 - -
HCH4g0820 846 PIRSF PLD_plant 1 846 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
HCH4g0820 846 ProSiteProfiles C2 domain profile. 1 142 IPR000008 -
HCH4g0820 846 Pfam C2 domain 15 143 IPR000008 -
HCH4g0820 846 Pfam Phospholipase D C terminal 768 836 IPR024632 -
HCH4g0820 846 CDD C2_plant_PLD 8 165 - -
HCH4g0820 846 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 166 IPR035892 -
HCH4g0820 846 PANTHER PHOSPHOLIPASE D 11 834 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
HCH4g0820 846 SUPERFAMILY Phospholipase D/nuclease 536 769 - -
HCH4g0820 846 SMART pld_4 692 719 IPR001736 GO:0003824(InterPro)
HCH4g0820 846 SMART pld_4 347 382 IPR001736 GO:0003824(InterPro)
HCH4g0820 846 Gene3D Endonuclease Chain A 212 465 - -
HCH4g0820 846 SMART C2_3c 15 141 IPR000008 -
HCH4g0820 846 Gene3D C2 domain 12 171 IPR035892 -
HCH4g0820 846 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 692 719 IPR001736 GO:0003824(InterPro)
HCH4g0820 846 Gene3D Endonuclease Chain A 520 738 - -
HCH4g0820 846 FunFam Phospholipase D 506 738 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0435 HCH-Chr4:2846438 HCH4g0820 HCH-Chr4:5270106 5.80E-201 dispersed
HCH4g0820 HCH-Chr4:5270106 HCH4g1310 HCH-Chr4:9179378 3.00E-197 dispersed
HCH13g1175 HCH-Chr13:38343685 HCH4g0820 HCH-Chr4:5270106 5.00E-269 transposed
HCH6g0948 HCH-Chr6:44300287 HCH4g0820 HCH-Chr4:5270106 1.40E-258 transposed
HCH14g0686 HCH-Chr14:35354145 HCH4g0820 HCH-Chr4:5270106 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0820 K01115 - csv:101213442 1558.12