Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0852 ATGACTATGAATTGCTTTTGTATTAGTCATCGCTCTAAAGATGCTAGCAAGGTCGAAATTGATAATGCCGTTAGATTTGATTCGCGCCATTCGTTTAATTCTTCAGGTAAGGGAAAGGGGAAGGAAGCTCGGAGTTATAGAAGTAGTAGTAGTTTGAAGGAGGGGAGCAATTGTGCTCGTAGTTTCACGTTTCGTGAACTCGCTGTAGCTACCAGAGGTTTCAAGGAAGTGAATTTGCTTGGGGAGGGAGGTTTTGGTCGTGTTTATAAAGGACGTCTCGAAACCGGTCAAATTGTTGCAGTTAAACAACTTAATCGTGAAGGCCTTCAAGGATTTCAGGAATTCATTGTGGAAGTTCTTATGTTAAGCTTGTTGCACCATCCCAATCTTGTTACTTTGATTGGTTACTGCACAGATGGAGATCAAAGGCTATTGGTTTATGAGTACATGCCTATGGGTAGCCTGGAAAATCATCTTTTTAATATGGATCCTGACAAAGAGCCACTAAGTTGGAATACAAGGATTAAGATTGCAGTTTCTGCAGCCAGAGGACTTGAGTATCTCCATTGTAAAGCAAACCCTCCAGTCATATACCGCGACTTGAAATCAGCTAATATCTTACTTGACAATGACTTCAATCCAAAGCTCTCAGATTTTGGACTGGCTAAACTGGGACCTGTTGGTGACAATACTCATGTTTCAACCAGAGTAATGGGAACATATGGATATTGTGCTCCAGAATATGCCATGAGCGGCAAATTGACCCTTAAATCAGATATTTACAGCTTTGGTGTGGTTCTGCTCGAGCTTATTACAGGGCGTAAGGCAATAGATCCCACGAAGAAACCGGGGGAGCAGAACCTAGTTGTTTGGTCTCGTCCTTTACTGAAGGACCGTCGGAAATTTGTGCAATTAGCAGATCCCCTGATGGAAGGACGCTTCCCTCTTCGTTGTTTGCAACATGCAATTGCAATTAGTGCAATGTGTCTTCAGGAGCAACCTACATTTCGCCCCCTTATCAGTGATATTGTTGTAGCACTAGAATACTTGACCTCTCAAAGTTATTTACAAGAACTACGTAAAGGTAGCAGCAGTTCTAGCCCATCACAACTGTCACCTTCAGAATATCATGGAGACTCCATTTCCCTGGAATCAAATTCCAAAAATCTGTGA 1173 42.2 MTMNCFCISHRSKDASKVEIDNAVRFDSRHSFNSSGKGKGKEARSYRSSSSLKEGSNCARSFTFRELAVATRGFKEVNLLGEGGFGRVYKGRLETGQIVAVKQLNREGLQGFQEFIVEVLMLSLLHHPNLVTLIGYCTDGDQRLLVYEYMPMGSLENHLFNMDPDKEPLSWNTRIKIAVSAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKAIDPTKKPGEQNLVVWSRPLLKDRRKFVQLADPLMEGRFPLRCLQHAIAISAMCLQEQPTFRPLISDIVVALEYLTSQSYLQELRKGSSSSSPSQLSPSEYHGDSISLESNSKNL 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5449072 5451904 - evm.model.ptg000015l.852 HCH4g0852 543096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0852 390 PANTHER OS07G0668900 PROTEIN 42 368 - -
HCH4g0852 390 FunFam Serine/threonine-protein kinase PBS1 150 365 - -
HCH4g0852 390 ProSiteProfiles Protein kinase domain profile. 74 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0852 390 MobiDBLite consensus disorder prediction 32 54 - -
HCH4g0852 390 ProSitePatterns Protein kinases ATP-binding region signature. 80 102 IPR017441 GO:0005524(InterPro)
HCH4g0852 390 Pfam Protein kinase domain 75 343 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0852 390 SMART serkin_6 74 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0852 390 MobiDBLite consensus disorder prediction 32 48 - -
HCH4g0852 390 CDD STKc_IRAK 80 348 - -
HCH4g0852 390 FunFam probable serine/threonine-protein kinase RLCKVII 46 149 - -
HCH4g0852 390 MobiDBLite consensus disorder prediction 361 390 - -
HCH4g0852 390 Gene3D Phosphorylase Kinase; domain 1 45 149 - -
HCH4g0852 390 SUPERFAMILY Protein kinase-like (PK-like) 47 349 IPR011009 -
HCH4g0852 390 Gene3D Transferase(Phosphotransferase) domain 1 150 367 - -
HCH4g0852 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0057 HCH-Chr12:291640 HCH4g0852 HCH-Chr4:5449072 1.90E-162 dispersed
HCH4g0852 HCH-Chr4:5449072 HCH7g1120 HCH-Chr7:43960087 5.40E-133 dispersed
HCH4g0851 HCH-Chr4:5442881 HCH4g0852 HCH-Chr4:5449072 9.20E-74 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81462 PF00069 Pkinase 1.50E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0852 - - - 0.0