Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0858 ATGAGCTGGGGTGAAGCTGGCAGAGTGGCACCCAAGTTGGAGTTTGAGCGAGCTCCTCAGCTAAGAAAAATTGGGCTTGATTTAGATAAGATGGCTGATAGTTGGGATGGAAGTTATGATTCTGGCAGTCTATCTGATGAGAGCAATTATTATGGGAGACTCTATATTGAGCCTATTTATGATTCTTTTTTGTGCCCTTTAACGAAGCAAGTCATGCGTGATCCCGTTACCATTGAAAGTGGGCAAACCTTTGAACGTGCTGCAATTGAAAAGTGGTTCAAGGAATGCAAAGAGAGTAGAAAGAAGCCTATCTGTCCGTTGACACTAAAAGAACTGAAAAGCACTGACCTAAATCCCAGTCTTGCTCTGAGAAATACCATTGAAGAGTGGACTGCTAGGAATGAAGCCGTTCAGCTTGATATGGCTCGTAAGTCACTGAATCTGGTAAGTCCAGAAAATGACACTCTGCTCTCTTTGAAGTATGTCCAGCATGTCTGCCAAAGAAGTTTATCGAAGCATGTTGCACGAAATGCGGGGCTAATACCCATGATTGTTAGCTTGTTGAAGAGCAGTAGTCGAAAAGTTCGGTTCAAAGCTTTGGAAACGCTTCTGATTGTGGTGCAGGAAGACGACAAGAGTAAGGAAATGTTAGCTGAGGGTGACACTATTCGCACAATTGTAAAGTTCTTGTCACATGAGCGTTCACGAGAGAGGGAGGAAGCTGTAGCTCTGCTGTATGAGCTTTCCAAGTCTGAAGTTTTGTGTGAAAAGATTGGTTCAGTTAATGGGGCTATTCTTATATTGGTTGGAATGTCGAGCAGCCAATCAGAGAATCTCTCTACTGTCGAAAATGCTGATAAAACATTGGAGAACCTGGAGAAGTGTGAGAATAATGTTCGACAAATGGCTGAATATGGTAGACTGAGGCCTCTTCTGACAAAGATTCTTGAAGGCCCACCAGAAATTAAACATTCCATGGCTGCATATCTGGGTGAGCTAGTTTTAAATAATGATGTGAAGCTCTTTGTAGCTCAAACTGTGGGGTCTTCTTTGATCAATATCATGAAGAGTGGTGATAAGCAGTCAAGAGAAGCTGCTTTGCAAGCCTTGAACCAGATCTCGTCTTTTGATGCAAGTGCAAAAGTGTTGGTAGAGGAAGGGATACTTCCACCCCTTGTTAAGGATCTTTTCTCAGTTGGTCCCAACCAACTTCCCATGCGACTAAAAGAAGTTTCTGCAACGATCCTTGCCAATGTTGTGAACTCAGGCTGTGATTTTGATTCCATTCCTGTGGAACCTGATCATCAGACTACACTTGTGTCTGAAGATACAGTTCATTCCTTGCTACAGCTCATTAGCAATACTGGTCCAGCTATCGAATGCAAGCTTCTCCAGGTCCTTGTGGGACTTACAAGTTCTCCTTCAACTATTCTGAGTGTTGTCACCGCCACTAAAAGCTCTGGTGCAATTATCAGCTTGGTTCAATTCATTGAAGCTCCACAGCAGGACTTGCGTGTTGCTGCTATAAAACTCCTCCGGAACATCTCCCCACACTTGAGCCAGGAGCTAGCAGATGCTCTACGTGGCTCAGCTGGACAGCTGGGAAGTTTATTTAGAGTCATAGCAGAAAATACTGGAATCACAGAAGAACAGGCAGCTGCTGTGGGGCTCCTAGCTGACCTCCCGGAAAGGGATTTGGGCCTCTCTAGGCAGATGCTTGACGATGATGCTTTTCAGTTGGTTTACTTTAGAGTCATTCGGCTCCGCCAAGGGGAAACCAGGGGCAGTCGCTTTGTAACACCATTCCTTGAAGATCTCGTTCGGATTCTTGCAAGGGTTACATATATATTGCGTGATGAGCCGGCTGCCCTTGCATTTTGTCGCAACCACAATCTTACTGCTTTATTCATTGATCTGCTTCAATCTAATGGACTTGACAATGTACAGATGGTTTCCGCCATGGCTTTGGAAAATTTATCTATAGAATCAAAACATTTGACCCTGTTACCTGAGTTGCCGGCCCCTGGATTTTGCGCCTCAATTTTTCCGTGTTTAAGCAAACCACCAGTAATAACAGGGCTGTGTCCACTCCACCGGGGTACATGCTCTTTGAAGGAAAGTTTTTGTCTTTTGGAAGGTCAGGCAGTGGACAAATTAGTAACCCTTTTAGACCACACGAATGAGAAGGTTGTTGAGGCAGCACTTGCAGCAATATCTACTTTGTTGGATGATGGAGTTGACATTGAGAAGGGGGTGAAGATTTTGTTCGATGCAGATGGGGTTAAGCCTATAATTGAAGTATTGCTCGAAAGCCGTACTGGTAATCTGATGAGAAGGTCTGTTTGGACAGTTGAGAGGCTGTTGAGGACAGACGATATTGCATTCGATTTTACAAATAATCCAAAGGTGAGTACGGCGCTTGTCGATGCCTTCCAGCATGGTGACAATCAAACCAGGCAAATTGCTGAGCGTGCCCTCAGGCACGTTGATAAGTTACCAAACTTCTCCGGTATATTTCCTAATACCGGATGA 2532 44.39 MSWGEAGRVAPKLEFERAPQLRKIGLDLDKMADSWDGSYDSGSLSDESNYYGRLYIEPIYDSFLCPLTKQVMRDPVTIESGQTFERAAIEKWFKECKESRKKPICPLTLKELKSTDLNPSLALRNTIEEWTARNEAVQLDMARKSLNLVSPENDTLLSLKYVQHVCQRSLSKHVARNAGLIPMIVSLLKSSSRKVRFKALETLLIVVQEDDKSKEMLAEGDTIRTIVKFLSHERSREREEAVALLYELSKSEVLCEKIGSVNGAILILVGMSSSQSENLSTVENADKTLENLEKCENNVRQMAEYGRLRPLLTKILEGPPEIKHSMAAYLGELVLNNDVKLFVAQTVGSSLINIMKSGDKQSREAALQALNQISSFDASAKVLVEEGILPPLVKDLFSVGPNQLPMRLKEVSATILANVVNSGCDFDSIPVEPDHQTTLVSEDTVHSLLQLISNTGPAIECKLLQVLVGLTSSPSTILSVVTATKSSGAIISLVQFIEAPQQDLRVAAIKLLRNISPHLSQELADALRGSAGQLGSLFRVIAENTGITEEQAAAVGLLADLPERDLGLSRQMLDDDAFQLVYFRVIRLRQGETRGSRFVTPFLEDLVRILARVTYILRDEPAALAFCRNHNLTALFIDLLQSNGLDNVQMVSAMALENLSIESKHLTLLPELPAPGFCASIFPCLSKPPVITGLCPLHRGTCSLKESFCLLEGQAVDKLVTLLDHTNEKVVEAALAAISTLLDDGVDIEKGVKILFDADGVKPIIEVLLESRTGNLMRRSVWTVERLLRTDDIAFDFTNNPKVSTALVDAFQHGDNQTRQIAERALRHVDKLPNFSGIFPNTG 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5497282 5502704 + evm.model.ptg000015l.858 HCH4g0858 543102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0858 843 Gene3D - 315 516 IPR011989 -
HCH4g0858 843 SUPERFAMILY ARM repeat 162 554 IPR016024 -
HCH4g0858 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 144 IPR013083 -
HCH4g0858 843 SMART arm_5 295 335 IPR000225 GO:0005515(InterPro)
HCH4g0858 843 SMART arm_5 702 743 IPR000225 GO:0005515(InterPro)
HCH4g0858 843 SMART arm_5 336 375 IPR000225 GO:0005515(InterPro)
HCH4g0858 843 SMART arm_5 376 421 IPR000225 GO:0005515(InterPro)
HCH4g0858 843 SMART arm_5 619 661 IPR000225 GO:0005515(InterPro)
HCH4g0858 843 SMART arm_5 168 208 IPR000225 GO:0005515(InterPro)
HCH4g0858 843 SMART arm_5 210 250 IPR000225 GO:0005515(InterPro)
HCH4g0858 843 Pfam U-box domain 61 135 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH4g0858 843 Gene3D - 603 834 IPR011989 -
HCH4g0858 843 SUPERFAMILY RING/U-box 53 140 - -
HCH4g0858 843 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 41 839 IPR052608 -
HCH4g0858 843 SMART Ubox_2 62 130 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH4g0858 843 SUPERFAMILY ARM repeat 487 831 IPR016024 -
HCH4g0858 843 ProSiteProfiles U-box domain profile. 58 137 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH4g0858 843 CDD RING-Ubox_PUB 60 117 IPR045210 -
HCH4g0858 843 Gene3D - 145 314 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0850 HCH-Chr1:57108085 HCH4g0858 HCH-Chr4:5497282 2.00E-126 dispersed
HCH4g0858 HCH-Chr4:5497282 HCH6g1353 HCH-Chr6:47556230 1.80E-13 dispersed
HCH4g0858 HCH-Chr4:5497282 HCH3g1349 HCH-Chr3:51169913 4.90E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0858 - - - 0.0