Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0858 ATGAGCTGGGGTGAAGCTGGCAGAGTGGCACCCAAGTTGGAGTTTGAGCGAGCTCCTCAGCTAAGAAAAATTGGGCTTGATTTAGATAAGATGGCTGATAGTTGGGATGGAAGTTATGATTCTGGCAGTCTATCTGATGAGAGCAATTATTATGGGAGACTCTATATTGAGCCTATTTATGATTCTTTTTTGTGCCCTTTAACGAAGCAAGTCATGCGTGATCCCGTTACCATTGAAAGTGGGCAAACCTTTGAACGTGCTGCAATTGAAAAGTGGTTCAAGGAATGCAAAGAGAGTAGAAAGAAGCCTATCTGTCCGTTGACACTAAAAGAACTGAAAAGCACTGACCTAAATCCCAGTCTTGCTCTGAGAAATACCATTGAAGAGTGGACTGCTAGGAATGAAGCCGTTCAGCTTGATATGGCTCGTAAGTCACTGAATCTGGTAAGTCCAGAAAATGACACTCTGCTCTCTTTGAAGTATGTCCAGCATGTCTGCCAAAGAAGTTTATCGAAGCATGTTGCACGAAATGCGGGGCTAATACCCATGATTGTTAGCTTGTTGAAGAGCAGTAGTCGAAAAGTTCGGTTCAAAGCTTTGGAAACGCTTCTGATTGTGGTGCAGGAAGACGACAAGAGTAAGGAAATGTTAGCTGAGGGTGACACTATTCGCACAATTGTAAAGTTCTTGTCACATGAGCGTTCACGAGAGAGGGAGGAAGCTGTAGCTCTGCTGTATGAGCTTTCCAAGTCTGAAGTTTTGTGTGAAAAGATTGGTTCAGTTAATGGGGCTATTCTTATATTGGTTGGAATGTCGAGCAGCCAATCAGAGAATCTCTCTACTGTCGAAAATGCTGATAAAACATTGGAGAACCTGGAGAAGTGTGAGAATAATGTTCGACAAATGGCTGAATATGGTAGACTGAGGCCTCTTCTGACAAAGATTCTTGAAGGCCCACCAGAAATTAAACATTCCATGGCTGCATATCTGGGTGAGCTAGTTTTAAATAATGATGTGAAGCTCTTTGTAGCTCAAACTGTGGGGTCTTCTTTGATCAATATCATGAAGAGTGGTGATAAGCAGTCAAGAGAAGCTGCTTTGCAAGCCTTGAACCAGATCTCGTCTTTTGATGCAAGTGCAAAAGTGTTGGTAGAGGAAGGGATACTTCCACCCCTTGTTAAGGATCTTTTCTCAGTTGGTCCCAACCAACTTCCCATGCGACTAAAAGAAGTTTCTGCAACGATCCTTGCCAATGTTGTGAACTCAGGCTGTGATTTTGATTCCATTCCTGTGGAACCTGATCATCAGACTACACTTGTGTCTGAAGATACAGTTCATTCCTTGCTACAGCTCATTAGCAATACTGGTCCAGCTATCGAATGCAAGCTTCTCCAGGTCCTTGTGGGACTTACAAGTTCTCCTTCAACTATTCTGAGTGTTGTCACCGCCACTAAAAGCTCTGGTGCAATTATCAGCTTGGTTCAATTCATTGAAGCTCCACAGCAGGACTTGCGTGTTGCTGCTATAAAACTCCTCCGGAACATCTCCCCACACTTGAGCCAGGAGCTAGCAGATGCTCTACGTGGCTCAGCTGGACAGCTGGGAAGTTTATTTAGAGTCATAGCAGAAAATACTGGAATCACAGAAGAACAGGCAGCTGCTGTGGGGCTCCTAGCTGACCTCCCGGAAAGGGATTTGGGCCTCTCTAGGCAGATGCTTGACGATGATGCTTTTCAGTTGGTTTACTTTAGAGTCATTCGGCTCCGCCAAGGGGAAACCAGGGGCAGTCGCTTTGTAACACCATTCCTTGAAGATCTCGTTCGGATTCTTGCAAGGGTTACATATATATTGCGTGATGAGCCGGCTGCCCTTGCATTTTGTCGCAACCACAATCTTACTGCTTTATTCATTGATCTGCTTCAATCTAATGGACTTGACAATGTACAGATGGTTTCCGCCATGGCTTTGGAAAATTTATCTATAGAATCAAAACATTTGACCCTGTTACCTGAGTTGCCGGCCCCTGGATTTTGCGCCTCAATTTTTCCGTGTTTAAGCAAACCACCAGTAATAACAGGGCTGTGTCCACTCCACCGGGGTACATGCTCTTTGAAGGAAAGTTTTTGTCTTTTGGAAGGTCAGGCAGTGGACAAATTAGTAACCCTTTTAGACCACACGAATGAGAAGGTTGTTGAGGCAGCACTTGCAGCAATATCTACTTTGTTGGATGATGGAGTTGACATTGAGAAGGGGGTGAAGATTTTGTTCGATGCAGATGGGGTTAAGCCTATAATTGAAGTATTGCTCGAAAGCCGTACTGGTAATCTGATGAGAAGGTCTGTTTGGACAGTTGAGAGGCTGTTGAGGACAGACGATATTGCATTCGATTTTACAAATAATCCAAAGGTGAGTACGGCGCTTGTCGATGCCTTCCAGCATGGTGACAATCAAACCAGGCAAATTGCTGAGCGTGCCCTCAGGCACGTTGATAAGTTACCAAACTTCTCCGGTATATTTCCTAATACCGGATGA 2532 44.39 MSWGEAGRVAPKLEFERAPQLRKIGLDLDKMADSWDGSYDSGSLSDESNYYGRLYIEPIYDSFLCPLTKQVMRDPVTIESGQTFERAAIEKWFKECKESRKKPICPLTLKELKSTDLNPSLALRNTIEEWTARNEAVQLDMARKSLNLVSPENDTLLSLKYVQHVCQRSLSKHVARNAGLIPMIVSLLKSSSRKVRFKALETLLIVVQEDDKSKEMLAEGDTIRTIVKFLSHERSREREEAVALLYELSKSEVLCEKIGSVNGAILILVGMSSSQSENLSTVENADKTLENLEKCENNVRQMAEYGRLRPLLTKILEGPPEIKHSMAAYLGELVLNNDVKLFVAQTVGSSLINIMKSGDKQSREAALQALNQISSFDASAKVLVEEGILPPLVKDLFSVGPNQLPMRLKEVSATILANVVNSGCDFDSIPVEPDHQTTLVSEDTVHSLLQLISNTGPAIECKLLQVLVGLTSSPSTILSVVTATKSSGAIISLVQFIEAPQQDLRVAAIKLLRNISPHLSQELADALRGSAGQLGSLFRVIAENTGITEEQAAAVGLLADLPERDLGLSRQMLDDDAFQLVYFRVIRLRQGETRGSRFVTPFLEDLVRILARVTYILRDEPAALAFCRNHNLTALFIDLLQSNGLDNVQMVSAMALENLSIESKHLTLLPELPAPGFCASIFPCLSKPPVITGLCPLHRGTCSLKESFCLLEGQAVDKLVTLLDHTNEKVVEAALAAISTLLDDGVDIEKGVKILFDADGVKPIIEVLLESRTGNLMRRSVWTVERLLRTDDIAFDFTNNPKVSTALVDAFQHGDNQTRQIAERALRHVDKLPNFSGIFPNTG 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5497282 5502704 + evm.model.ptg000015l.858 HCH4g0858 543102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0858 843 Gene3D - 315 516 IPR011989 -
HCH4g0858 843 SUPERFAMILY ARM repeat 162 554 IPR016024 -
HCH4g0858 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 144 IPR013083 -
HCH4g0858 843 SMART arm_5 295 335 IPR000225 GO:0005515(InterPro)
HCH4g0858 843 SMART arm_5 702 743 IPR000225 GO:0005515(InterPro)
HCH4g0858 843 SMART arm_5 336 375 IPR000225 GO:0005515(InterPro)
HCH4g0858 843 SMART arm_5 376 421 IPR000225 GO:0005515(InterPro)
HCH4g0858 843 SMART arm_5 619 661 IPR000225 GO:0005515(InterPro)
HCH4g0858 843 SMART arm_5 168 208 IPR000225 GO:0005515(InterPro)
HCH4g0858 843 SMART arm_5 210 250 IPR000225 GO:0005515(InterPro)
HCH4g0858 843 Pfam U-box domain 61 135 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH4g0858 843 Gene3D - 603 834 IPR011989 -
HCH4g0858 843 SUPERFAMILY RING/U-box 53 140 - -
HCH4g0858 843 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 41 839 IPR052608 -
HCH4g0858 843 SMART Ubox_2 62 130 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH4g0858 843 SUPERFAMILY ARM repeat 487 831 IPR016024 -
HCH4g0858 843 ProSiteProfiles U-box domain profile. 58 137 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH4g0858 843 CDD RING-Ubox_PUB 60 117 IPR045210 -
HCH4g0858 843 Gene3D - 145 314 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0858 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0850 HCH-Chr1:57108085 HCH4g0858 HCH-Chr4:5497282 2.00E-126 dispersed
HCH4g0858 HCH-Chr4:5497282 HCH6g1353 HCH-Chr6:47556230 1.80E-13 dispersed
HCH4g0858 HCH-Chr4:5497282 HCH3g1349 HCH-Chr3:51169913 4.90E-14 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH9g0270 . 1 1039 U-box Gene Family AT5G15400 75.0 0.0e+00 1534.2
HCH2g0003 . 1 834 U-box Gene Family AT5G67340 50.2 1.9e-128 456.8
HCH2g0003 . 196 834 U-box Gene Family AT2G23140 65.4 4.1e-122 435.6
HCH4g0103 . 1 765 U-box Gene Family AT1G24330 59.8 3.4e-248 854.7
HCH1g1136 . 1 756 U-box Gene Family AT1G24330 58.2 4.8e-234 807.7
HCH4g0103 . 1 764 U-box Gene Family AT1G67530 59.6 6.5e-247 850.5
HCH1g1136 . 1 762 U-box Gene Family AT1G67530 58.4 1.7e-231 799.3
HCH14g0857 . 8 367 U-box Gene Family AT4G21350 61.8 2.1e-118 422.5
HCH5g0206 . 134 456 U-box Gene Family AT3G07360 56.7 3.6e-82 302.0
HCH1g0050 . 233 447 U-box Gene Family AT1G71020 65.8 8.8e-77 284.6
HCH10g1311 . 266 454 U-box Gene Family AT1G71020 59.4 1.1e-55 214.5
HCH2g1094 . 253 433 U-box Gene Family AT1G71020 58.3 2.2e-51 200.3
HCH1g0691 . 251 418 U-box Gene Family AT1G71020 60.2 7.0e-50 195.3
HCH3g1349 . 258 430 U-box Gene Family AT1G71020 58.0 2.7e-49 193.4
HCH1g0050 . 20 651 U-box Gene Family AT1G23030 58.0 1.4e-111 400.6
HCH10g1311 . 19 650 U-box Gene Family AT1G23030 55.5 1.2e-99 360.9
HCH2g1094 . 95 637 U-box Gene Family AT2G28830 53.2 4.4e-107 385.6
HCH3g1349 . 92 638 U-box Gene Family AT2G28830 59.0 2.0e-99 360.1
HCH2g1094 . 1 637 U-box Gene Family AT3G46510 67.7 9.3e-170 594.0
HCH3g1349 . 1 637 U-box Gene Family AT3G46510 67.2 5.6e-159 558.1
HCH1g0691 . 15 625 U-box Gene Family AT3G46510 58.5 4.2e-122 435.6
HCH1g0691 . 11 626 U-box Gene Family AT3G54850 69.0 9.2e-167 583.9
HCH2g1094 . 15 644 U-box Gene Family AT3G54850 56.2 2.7e-118 422.9
HCH2g0608 . 77 628 U-box Gene Family AT5G42340 65.8 5.0e-131 465.3
HCH9g0828 . 1 679 U-box Gene Family AT5G01830 57.0 4.2e-202 701.4
HCH3g0732 . 1 714 U-box Gene Family AT1G29340 69.2 3.9e-254 874.4
HCH11g0480 . 2 407 U-box Gene Family AT3G52450 57.5 5.8e-136 481.1
HCH9g1187 . 4 416 U-box Gene Family AT3G52450 55.3 4.0e-129 458.4
HCH11g0480 . 2 407 U-box Gene Family AT2G35930 59.3 7.1e-136 480.7
HCH9g1187 . 2 415 U-box Gene Family AT2G35930 54.6 4.8e-124 441.4
HCH11g0896 . 1 427 U-box Gene Family AT3G19380 62.7 1.2e-143 506.5
HCH11g0896 . 1 427 U-box Gene Family AT1G49780 63.6 1.5e-149 526.2
HCH2g0197 . 1 411 U-box Gene Family AT5G64660 52.8 3.6e-111 398.7
HCH2g0197 . 1 411 U-box Gene Family AT5G09800 51.7 9.4e-104 374.0
HCH2g0197 . 7 411 U-box Gene Family AT3G18710 50.1 1.2e-98 357.1
HCH12g0544 . 1 451 U-box Gene Family AT3G49810 67.8 5.9e-168 587.4
HCH4g0575 . 1 394 U-box Gene Family AT3G49810 65.5 1.1e-142 503.4
HCH12g0544 . 1 451 U-box Gene Family AT5G65920 66.2 1.1e-161 566.6
HCH4g0575 . 1 394 U-box Gene Family AT5G65920 66.0 3.6e-141 498.4
HCH13g1129 . 89 610 U-box Gene Family AT2G45910 54.7 1.6e-155 547.0
HCH5g0667 . 25 822 U-box Gene Family AT4G25160 51.4 4.5e-222 768.1
HCH4g0858 . 34 843 U-box Gene Family AT1G76390 62.0 3.3e-278 954.5
HCH4g0858 . 42 841 U-box Gene Family AT1G20780 62.6 4.7e-285 977.2
HCH4g0103 . 1 767 U-box Gene Family AT1G27910 63.4 5.8e-272 933.7
HCH1g1136 . 1 765 U-box Gene Family AT1G27910 63.2 1.4e-262 902.5
HCH14g0364 . 1 592 U-box Gene Family AT5G67530 75.0 5.8e-264 906.7
HCH7g1556 . 3 157 U-box Gene Family AT5G67530 53.5 2.9e-45 180.3
HCH5g0667 . 12 822 U-box Gene Family AT5G61550 50.2 4.9e-224 774.6
HCH7g1364 . 1 518 U-box Gene Family AT1G04510 74.7 3.6e-225 777.7
HCH7g1364 . 1 485 U-box Gene Family AT2G33340 74.7 1.9e-212 735.3
HCH5g0205 . 5 273 U-box Gene Family AT3G07370 66.2 2.5e-100 362.1
HCH9g0270 . 1 1039 U-box Gene Family AT5G15400 75.0 0.0e+00 1534.2
HCH2g0003 . 1 834 U-box Gene Family AT5G67340 50.2 1.9e-128 456.8
HCH2g0003 . 196 834 U-box Gene Family AT2G23140 65.4 4.1e-122 435.6
HCH4g0103 . 1 765 U-box Gene Family AT1G24330 59.8 3.4e-248 854.7
HCH1g1136 . 1 756 U-box Gene Family AT1G24330 58.2 4.8e-234 807.7
HCH4g0103 . 1 764 U-box Gene Family AT1G67530 59.6 6.5e-247 850.5
HCH1g1136 . 1 762 U-box Gene Family AT1G67530 58.4 1.7e-231 799.3
HCH14g0857 . 8 367 U-box Gene Family AT4G21350 61.8 2.1e-118 422.5
HCH5g0206 . 134 456 U-box Gene Family AT3G07360 56.7 3.6e-82 302.0
HCH1g0050 . 233 447 U-box Gene Family AT1G71020 65.8 8.8e-77 284.6
HCH10g1311 . 266 454 U-box Gene Family AT1G71020 59.4 1.1e-55 214.5
HCH2g1094 . 253 433 U-box Gene Family AT1G71020 58.3 2.2e-51 200.3
HCH1g0691 . 251 418 U-box Gene Family AT1G71020 60.2 7.0e-50 195.3
HCH3g1349 . 258 430 U-box Gene Family AT1G71020 58.0 2.7e-49 193.4
HCH1g0050 . 20 651 U-box Gene Family AT1G23030 58.0 1.4e-111 400.6
HCH10g1311 . 19 650 U-box Gene Family AT1G23030 55.5 1.2e-99 360.9
HCH2g1094 . 95 637 U-box Gene Family AT2G28830 53.2 4.4e-107 385.6
HCH3g1349 . 92 638 U-box Gene Family AT2G28830 59.0 2.0e-99 360.1
HCH2g1094 . 1 637 U-box Gene Family AT3G46510 67.7 9.3e-170 594.0
HCH3g1349 . 1 637 U-box Gene Family AT3G46510 67.2 5.6e-159 558.1
HCH1g0691 . 15 625 U-box Gene Family AT3G46510 58.5 4.2e-122 435.6
HCH1g0691 . 11 626 U-box Gene Family AT3G54850 69.0 9.2e-167 583.9
HCH2g1094 . 15 644 U-box Gene Family AT3G54850 56.2 2.7e-118 422.9
HCH2g0608 . 77 628 U-box Gene Family AT5G42340 65.8 5.0e-131 465.3
HCH9g0828 . 1 679 U-box Gene Family AT5G01830 57.0 4.2e-202 701.4
HCH3g0732 . 1 714 U-box Gene Family AT1G29340 69.2 3.9e-254 874.4
HCH11g0480 . 2 407 U-box Gene Family AT3G52450 57.5 5.8e-136 481.1
HCH9g1187 . 4 416 U-box Gene Family AT3G52450 55.3 4.0e-129 458.4
HCH11g0480 . 2 407 U-box Gene Family AT2G35930 59.3 7.1e-136 480.7
HCH9g1187 . 2 415 U-box Gene Family AT2G35930 54.6 4.8e-124 441.4
HCH11g0896 . 1 427 U-box Gene Family AT3G19380 62.7 1.2e-143 506.5
HCH11g0896 . 1 427 U-box Gene Family AT1G49780 63.6 1.5e-149 526.2
HCH2g0197 . 1 411 U-box Gene Family AT5G64660 52.8 3.6e-111 398.7
HCH2g0197 . 1 411 U-box Gene Family AT5G09800 51.7 9.4e-104 374.0
HCH2g0197 . 7 411 U-box Gene Family AT3G18710 50.1 1.2e-98 357.1
HCH12g0544 . 1 451 U-box Gene Family AT3G49810 67.8 5.9e-168 587.4
HCH4g0575 . 1 394 U-box Gene Family AT3G49810 65.5 1.1e-142 503.4
HCH12g0544 . 1 451 U-box Gene Family AT5G65920 66.2 1.1e-161 566.6
HCH4g0575 . 1 394 U-box Gene Family AT5G65920 66.0 3.6e-141 498.4
HCH13g1129 . 89 610 U-box Gene Family AT2G45910 54.7 1.6e-155 547.0
HCH5g0667 . 25 822 U-box Gene Family AT4G25160 51.4 4.5e-222 768.1
HCH4g0858 . 34 843 U-box Gene Family AT1G76390 62.0 3.3e-278 954.5
HCH4g0858 . 42 841 U-box Gene Family AT1G20780 62.6 4.7e-285 977.2
HCH4g0103 . 1 767 U-box Gene Family AT1G27910 63.4 5.8e-272 933.7
HCH1g1136 . 1 765 U-box Gene Family AT1G27910 63.2 1.4e-262 902.5
HCH14g0364 . 1 592 U-box Gene Family AT5G67530 75.0 5.8e-264 906.7
HCH7g1556 . 3 157 U-box Gene Family AT5G67530 53.5 2.9e-45 180.3
HCH5g0667 . 12 822 U-box Gene Family AT5G61550 50.2 4.9e-224 774.6
HCH7g1364 . 1 518 U-box Gene Family AT1G04510 74.7 3.6e-225 777.7
HCH7g1364 . 1 485 U-box Gene Family AT2G33340 74.7 1.9e-212 735.3
HCH5g0205 . 5 273 U-box Gene Family AT3G07370 66.2 2.5e-100 362.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006312 2 1 2 2 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 0 2 2 1 38