Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0865 ATGTCAGGATCTGAGACTGGTGTAATGGCAAATAGAGAACCCTTCAGTGTGGGAATTCAGAATAATTCTTTACAGTCACAGCCTATGACACAAAACATGGAATTATACAGTGTTGATGGCAGTGGCGCATCCGTTTACAAGCCCCCCACCTCTACCTCACCGTCCTACCAATCCTCCGTGACCGGCGTTATCGGTAATGCCGGAATCGATGGATCGGGTGGTGTATCTGTGTTACCTCATGGTTTTAATATAAATTCTGGGAGTAGTGAGCAATTAAAGAGGAAGAGAGGTAGGCCAAGGAAATATGGACCTGATGGATCTATGGCATTGGCTTTAGGTTCTGTGTCACCATCTGTTGCTCCTACTCAATCGAGTGGCGGTTTTTCGCCTTCAAAGATTGCGGTGCCTGCTTCAGATGGATTAGGATTAGCCTCACCAAATTCATTGAAGAAAAATAAAGGAAGGCCTCCTGGTTCTAGCAAAAAAAGGAAATTGGAAGCTTTAGGATCAGCTGGTATTGGATTCACTCCGCATTTTATCAATGTGAAAGCTGGAGAGGATGTATCATCGAAAATAATGACCTTTTCTCAGAATGGTCCTAGGGCTGTTTGTATCCTCTCTGCAAATGGAGCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGAACTGTTACTTATGAGGGCCGGTTTGAAATTTTGTCACTATCGGGTTCATTTCTGTTGTCTGAAAATGGTGGTCAGAGGAGCAGAACTGGAGGTTTGAGTGTGTCTTTGTCTGGCCCAGATGGCCGAGTTTTAGGTGGTGGTGTGGCAGGTCTACTGACGGCTGCATCTCCCGTTCAGGTGGTTGTGGGTAGTTTCTTAGCCGAGGGTGGCAAGGATTTGAAGTCACCACGCCAAATCGAACCCATCACCGTGTCACCACAACTAAACCCAGTTGGCATTGGTCACCTGAATGCAGGAGTTAGTAGTCCATCTCATGGGACGTTAAGTGACTCTTCTGATGGCCCTGTAAGCCCACTTAACAACAGTTCAGGAGCCTGCAATAACAGTAATCCACAGGGAATGTCAGGCATGCCATGGAAGTAA 1098 46.17 MSGSETGVMANREPFSVGIQNNSLQSQPMTQNMELYSVDGSGASVYKPPTSTSPSYQSSVTGVIGNAGIDGSGGVSVLPHGFNINSGSSEQLKRKRGRPRKYGPDGSMALALGSVSPSVAPTQSSGGFSPSKIAVPASDGLGLASPNSLKKNKGRPPGSSKKRKLEALGSAGIGFTPHFINVKAGEDVSSKIMTFSQNGPRAVCILSANGAISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFLAEGGKDLKSPRQIEPITVSPQLNPVGIGHLNAGVSSPSHGTLSDSSDGPVSPLNNSSGACNNSNPQGMSGMPWK 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5539854 5543096 + evm.model.ptg000015l.865 HCH4g0865 543109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0865 365 MobiDBLite consensus disorder prediction 144 164 - -
HCH4g0865 365 CDD DUF296 176 290 IPR005175 -
HCH4g0865 365 FunFam AT-hook motif nuclear-localized protein 1-like 177 306 - -
HCH4g0865 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 29 338 IPR039605 GO:0003680(InterPro)
HCH4g0865 365 Pfam Plants and Prokaryotes Conserved (PCC) domain 177 290 IPR005175 -
HCH4g0865 365 MobiDBLite consensus disorder prediction 318 365 - -
HCH4g0865 365 MobiDBLite consensus disorder prediction 85 109 - -
HCH4g0865 365 MobiDBLite consensus disorder prediction 325 365 - -
HCH4g0865 365 ProSiteProfiles PPC domain profile profile. 171 316 IPR005175 -
HCH4g0865 365 SUPERFAMILY AF0104/ALDC/Ptd012-like 175 293 - -
HCH4g0865 365 Gene3D - 177 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0695 HCH-Chr10:6356803 HCH4g0865 HCH-Chr4:5539854 1.30E-40 dispersed
HCH11g1149 HCH-Chr11:43720186 HCH4g0865 HCH-Chr4:5539854 1.50E-48 dispersed
HCH12g0036 HCH-Chr12:209010 HCH4g0865 HCH-Chr4:5539854 1.00E-92 dispersed
HCH13g1146 HCH-Chr13:37627919 HCH4g0865 HCH-Chr4:5539854 4.20E-57 dispersed
HCH4g0865 HCH-Chr4:5539854 HCH6g1108 HCH-Chr6:45683439 8.50E-56 dispersed
HCH4g0865 HCH-Chr4:5539854 HCH7g1547 HCH-Chr7:47928116 5.90E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0865 - - - 0.0