Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH4g0865 | ATGTCAGGATCTGAGACTGGTGTAATGGCAAATAGAGAACCCTTCAGTGTGGGAATTCAGAATAATTCTTTACAGTCACAGCCTATGACACAAAACATGGAATTATACAGTGTTGATGGCAGTGGCGCATCCGTTTACAAGCCCCCCACCTCTACCTCACCGTCCTACCAATCCTCCGTGACCGGCGTTATCGGTAATGCCGGAATCGATGGATCGGGTGGTGTATCTGTGTTACCTCATGGTTTTAATATAAATTCTGGGAGTAGTGAGCAATTAAAGAGGAAGAGAGGTAGGCCAAGGAAATATGGACCTGATGGATCTATGGCATTGGCTTTAGGTTCTGTGTCACCATCTGTTGCTCCTACTCAATCGAGTGGCGGTTTTTCGCCTTCAAAGATTGCGGTGCCTGCTTCAGATGGATTAGGATTAGCCTCACCAAATTCATTGAAGAAAAATAAAGGAAGGCCTCCTGGTTCTAGCAAAAAAAGGAAATTGGAAGCTTTAGGATCAGCTGGTATTGGATTCACTCCGCATTTTATCAATGTGAAAGCTGGAGAGGATGTATCATCGAAAATAATGACCTTTTCTCAGAATGGTCCTAGGGCTGTTTGTATCCTCTCTGCAAATGGAGCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGAACTGTTACTTATGAGGGCCGGTTTGAAATTTTGTCACTATCGGGTTCATTTCTGTTGTCTGAAAATGGTGGTCAGAGGAGCAGAACTGGAGGTTTGAGTGTGTCTTTGTCTGGCCCAGATGGCCGAGTTTTAGGTGGTGGTGTGGCAGGTCTACTGACGGCTGCATCTCCCGTTCAGGTGGTTGTGGGTAGTTTCTTAGCCGAGGGTGGCAAGGATTTGAAGTCACCACGCCAAATCGAACCCATCACCGTGTCACCACAACTAAACCCAGTTGGCATTGGTCACCTGAATGCAGGAGTTAGTAGTCCATCTCATGGGACGTTAAGTGACTCTTCTGATGGCCCTGTAAGCCCACTTAACAACAGTTCAGGAGCCTGCAATAACAGTAATCCACAGGGAATGTCAGGCATGCCATGGAAGTAA | 1098 | 46.17 | MSGSETGVMANREPFSVGIQNNSLQSQPMTQNMELYSVDGSGASVYKPPTSTSPSYQSSVTGVIGNAGIDGSGGVSVLPHGFNINSGSSEQLKRKRGRPRKYGPDGSMALALGSVSPSVAPTQSSGGFSPSKIAVPASDGLGLASPNSLKKNKGRPPGSSKKRKLEALGSAGIGFTPHFINVKAGEDVSSKIMTFSQNGPRAVCILSANGAISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFLAEGGKDLKSPRQIEPITVSPQLNPVGIGHLNAGVSSPSHGTLSDSSDGPVSPLNNSSGACNNSNPQGMSGMPWK | 365 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5539854 | 5543096 | + | evm.model.ptg000015l.865 | HCH4g0865 | 543109 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH4g0865 | 365 | MobiDBLite | consensus disorder prediction | 144 | 164 | - | - | |
HCH4g0865 | 365 | CDD | DUF296 | 176 | 290 | IPR005175 | - | |
HCH4g0865 | 365 | FunFam | AT-hook motif nuclear-localized protein 1-like | 177 | 306 | - | - | |
HCH4g0865 | 365 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 29 | 338 | IPR039605 | GO:0003680(InterPro) | |
HCH4g0865 | 365 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 177 | 290 | IPR005175 | - | |
HCH4g0865 | 365 | MobiDBLite | consensus disorder prediction | 318 | 365 | - | - | |
HCH4g0865 | 365 | MobiDBLite | consensus disorder prediction | 85 | 109 | - | - | |
HCH4g0865 | 365 | MobiDBLite | consensus disorder prediction | 325 | 365 | - | - | |
HCH4g0865 | 365 | ProSiteProfiles | PPC domain profile profile. | 171 | 316 | IPR005175 | - | |
HCH4g0865 | 365 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 175 | 293 | - | - | |
HCH4g0865 | 365 | Gene3D | - | 177 | 314 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0695 | HCH-Chr10:6356803 | HCH4g0865 | HCH-Chr4:5539854 | 1.30E-40 | dispersed | |
HCH11g1149 | HCH-Chr11:43720186 | HCH4g0865 | HCH-Chr4:5539854 | 1.50E-48 | dispersed | |
HCH12g0036 | HCH-Chr12:209010 | HCH4g0865 | HCH-Chr4:5539854 | 1.00E-92 | dispersed | |
HCH13g1146 | HCH-Chr13:37627919 | HCH4g0865 | HCH-Chr4:5539854 | 4.20E-57 | dispersed | |
HCH4g0865 | HCH-Chr4:5539854 | HCH6g1108 | HCH-Chr6:45683439 | 8.50E-56 | dispersed | |
HCH4g0865 | HCH-Chr4:5539854 | HCH7g1547 | HCH-Chr7:47928116 | 5.90E-57 | transposed |
Pathway information
