Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0893 ATGCAAAACCAAACCATGAACTTGGTTTTATCTACTGATGCAAAGCCAAGGCTTAAATGGACAAATGAGCTTCATCAGAGATTTGTGGAAGGTGTCAATAACCTTGGAGGAGCAGATAAGGCTACACCCAAGAGCTTAATGAGAATGATGGGAATTACTGGACTGACTCTCTACCACCTCAAGAGCCATTTACAAAAATACAGATTAGGAAAAAGTCAACAGTCAGAAACCAGTGACCAAATTAAACTAGAAGATTTTAAAGAGATTCAGAGACAAGATGGGCCTATGAATGAGGAAAACTATGATGGGAATCAGAGTCAGATGAATAATGAAAGTTTGAAGATTTCTGAAGCTCTTCAATTACAGTTGGATGTGCAGAAGAAATTACACGAGCAGATTGAGGTACAAAGACATTTGCAGCTAAGAATTGAAGCTCAAGGGAAGTACTTACAATCAGTACTGAGAAAAGCTCAAGAATCAATAGCAGGATATGGTTGTTCCTCCGCAGCACTAGAGCGCGCAAAAGCTGAGCTCTCTCAGTTAGCATCCATGGTGAATTCAGGATGTCAGAGTTGTTCATTCTCAGAGCTAACAGAATCAGGAGAATTGAACTTCAAAGACATTGAAAGGAAAGAAGTGAGAGGGACAATGTACTCGATGGAAAGCTCCCTAACATCTTCAGAAAGCTCAGGGCGACGAGAAGAGAAGGAAACAACGGTCGAAAACGCAGAATCTCGAAAGTACAATGAGCCCTCATTAAGCAGAGGGAGGAAGAGAAGAGGAAGCTGCACATCTGATGATTTGTTATCAAATAAAAGATGCACGACTCATAAAGAGGAGGAGAAAGATGGCGAATTCAAAGTTTGTGGAATGATTGATTTGAATAGCCAAGTTCATTATCAGAGTGATATTGATTCAGATGCAGCAGGTGAATTGGAGCCACAGCTGATTGAGTACCTTTAG 963 40.6 MQNQTMNLVLSTDAKPRLKWTNELHQRFVEGVNNLGGADKATPKSLMRMMGITGLTLYHLKSHLQKYRLGKSQQSETSDQIKLEDFKEIQRQDGPMNEENYDGNQSQMNNESLKISEALQLQLDVQKKLHEQIEVQRHLQLRIEAQGKYLQSVLRKAQESIAGYGCSSAALERAKAELSQLASMVNSGCQSCSFSELTESGELNFKDIERKEVRGTMYSMESSLTSSESSGRREEKETTVENAESRKYNEPSLSRGRKRRGSCTSDDLLSNKRCTTHKEEEKDGEFKVCGMIDLNSQVHYQSDIDSDAAGELEPQLIEYL 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5710994 5712403 - evm.model.ptg000015l.893 HCH4g0893 543137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0893 320 MobiDBLite consensus disorder prediction 228 265 - -
HCH4g0893 320 Pfam MYB-CC type transfactor, LHEQLE motif 114 159 IPR025756 -
HCH4g0893 320 Gene3D - 14 72 - -
HCH4g0893 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 72 IPR017930 -
HCH4g0893 320 NCBIfam myb-like DNA-binding domain, SHAQKYF class 15 70 IPR006447 GO:0003677(InterPro)
HCH4g0893 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 272 IPR046955 GO:0003700(InterPro)
HCH4g0893 320 Pfam Myb-like DNA-binding domain 17 68 IPR001005 -
HCH4g0893 320 FunFam Myb family transcription factor 14 72 - -
HCH4g0893 320 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
HCH4g0893 320 MobiDBLite consensus disorder prediction 216 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0893 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0893 HCH-Chr4:5710994 HCH9g1420 HCH-Chr9:46720663 1.80E-38 dispersed
HCH4g0893 HCH-Chr4:5710994 HCH2g0956 HCH-Chr2:52937380 3.10E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH5g0246 . 176 377 G2-like Transcription Factor Family AT5G16560 51.2 9.4e-40 161.4
HCH4g0682 . 1 183 G2-like Transcription Factor Family AT5G42630 59.5 8.3e-46 180.6
HCH12g0669 . 12 175 G2-like Transcription Factor Family AT5G42630 60.2 1.4e-40 163.3
HCH8g0792 . 3 339 G2-like Transcription Factor Family AT2G03500 50.4 6.0e-77 285.0
HCH1g0801 . 1 259 G2-like Transcription Factor Family AT1G25550 53.7 3.3e-52 202.2
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT1G25550 54.6 8.1e-51 197.6
HCH1g0801 . 19 269 G2-like Transcription Factor Family AT3G25790 50.2 2.6e-43 172.6
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT3G25790 51.3 6.0e-40 161.4
HCH3g1389 . 1 263 G2-like Transcription Factor Family AT3G46640 52.0 5.4e-54 208.4
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT5G05090 55.6 3.6e-72 268.5
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT5G05090 55.5 3.7e-69 258.5
HCH7g1427 . 13 309 G2-like Transcription Factor Family AT4G13640 53.3 4.6e-52 201.8
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH4g0893 . 6 230 G2-like Transcription Factor Family AT1G69580 55.9 2.0e-51 199.9
HCH7g0014 . 1 385 G2-like Transcription Factor Family AT1G79430 53.4 7.2e-84 307.8
HCH2g0956 . 1 363 G2-like Transcription Factor Family AT1G79430 56.3 4.7e-83 305.1
HCH7g1427 . 38 197 G2-like Transcription Factor Family AT1G79430 61.4 2.3e-37 153.3
HCH14g0730 . 54 292 G2-like Transcription Factor Family AT2G01060 60.9 2.1e-55 212.6
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT3G10760 61.3 2.2e-90 329.3
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT3G10760 61.3 1.6e-85 313.2
HCH9g0976 . 1 201 G2-like Transcription Factor Family AT2G40970 61.6 7.8e-61 230.7
HCH9g1278 . 1 201 G2-like Transcription Factor Family AT2G40970 58.3 4.3e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004564 2 2 1 2 1 1 2 0 2 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33483 PF00249 Myb_DNA-binding 3.30E-07 CL0123 HCH TF