Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0893 ATGCAAAACCAAACCATGAACTTGGTTTTATCTACTGATGCAAAGCCAAGGCTTAAATGGACAAATGAGCTTCATCAGAGATTTGTGGAAGGTGTCAATAACCTTGGAGGAGCAGATAAGGCTACACCCAAGAGCTTAATGAGAATGATGGGAATTACTGGACTGACTCTCTACCACCTCAAGAGCCATTTACAAAAATACAGATTAGGAAAAAGTCAACAGTCAGAAACCAGTGACCAAATTAAACTAGAAGATTTTAAAGAGATTCAGAGACAAGATGGGCCTATGAATGAGGAAAACTATGATGGGAATCAGAGTCAGATGAATAATGAAAGTTTGAAGATTTCTGAAGCTCTTCAATTACAGTTGGATGTGCAGAAGAAATTACACGAGCAGATTGAGGTACAAAGACATTTGCAGCTAAGAATTGAAGCTCAAGGGAAGTACTTACAATCAGTACTGAGAAAAGCTCAAGAATCAATAGCAGGATATGGTTGTTCCTCCGCAGCACTAGAGCGCGCAAAAGCTGAGCTCTCTCAGTTAGCATCCATGGTGAATTCAGGATGTCAGAGTTGTTCATTCTCAGAGCTAACAGAATCAGGAGAATTGAACTTCAAAGACATTGAAAGGAAAGAAGTGAGAGGGACAATGTACTCGATGGAAAGCTCCCTAACATCTTCAGAAAGCTCAGGGCGACGAGAAGAGAAGGAAACAACGGTCGAAAACGCAGAATCTCGAAAGTACAATGAGCCCTCATTAAGCAGAGGGAGGAAGAGAAGAGGAAGCTGCACATCTGATGATTTGTTATCAAATAAAAGATGCACGACTCATAAAGAGGAGGAGAAAGATGGCGAATTCAAAGTTTGTGGAATGATTGATTTGAATAGCCAAGTTCATTATCAGAGTGATATTGATTCAGATGCAGCAGGTGAATTGGAGCCACAGCTGATTGAGTACCTTTAG 963 40.6 MQNQTMNLVLSTDAKPRLKWTNELHQRFVEGVNNLGGADKATPKSLMRMMGITGLTLYHLKSHLQKYRLGKSQQSETSDQIKLEDFKEIQRQDGPMNEENYDGNQSQMNNESLKISEALQLQLDVQKKLHEQIEVQRHLQLRIEAQGKYLQSVLRKAQESIAGYGCSSAALERAKAELSQLASMVNSGCQSCSFSELTESGELNFKDIERKEVRGTMYSMESSLTSSESSGRREEKETTVENAESRKYNEPSLSRGRKRRGSCTSDDLLSNKRCTTHKEEEKDGEFKVCGMIDLNSQVHYQSDIDSDAAGELEPQLIEYL 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5710994 5712403 - evm.model.ptg000015l.893 HCH4g0893 543137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0893 320 MobiDBLite consensus disorder prediction 228 265 - -
HCH4g0893 320 Pfam MYB-CC type transfactor, LHEQLE motif 114 159 IPR025756 -
HCH4g0893 320 Gene3D - 14 72 - -
HCH4g0893 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 72 IPR017930 -
HCH4g0893 320 NCBIfam myb-like DNA-binding domain, SHAQKYF class 15 70 IPR006447 GO:0003677(InterPro)
HCH4g0893 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 272 IPR046955 GO:0003700(InterPro)
HCH4g0893 320 Pfam Myb-like DNA-binding domain 17 68 IPR001005 -
HCH4g0893 320 FunFam Myb family transcription factor 14 72 - -
HCH4g0893 320 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
HCH4g0893 320 MobiDBLite consensus disorder prediction 216 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0893 HCH-Chr4:5710994 HCH9g1420 HCH-Chr9:46720663 1.80E-38 dispersed
HCH4g0893 HCH-Chr4:5710994 HCH2g0956 HCH-Chr2:52937380 3.10E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33483 PF00249 Myb_DNA-binding 3.30E-07 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0893 - - - 0.0