Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH4g0893 | ATGCAAAACCAAACCATGAACTTGGTTTTATCTACTGATGCAAAGCCAAGGCTTAAATGGACAAATGAGCTTCATCAGAGATTTGTGGAAGGTGTCAATAACCTTGGAGGAGCAGATAAGGCTACACCCAAGAGCTTAATGAGAATGATGGGAATTACTGGACTGACTCTCTACCACCTCAAGAGCCATTTACAAAAATACAGATTAGGAAAAAGTCAACAGTCAGAAACCAGTGACCAAATTAAACTAGAAGATTTTAAAGAGATTCAGAGACAAGATGGGCCTATGAATGAGGAAAACTATGATGGGAATCAGAGTCAGATGAATAATGAAAGTTTGAAGATTTCTGAAGCTCTTCAATTACAGTTGGATGTGCAGAAGAAATTACACGAGCAGATTGAGGTACAAAGACATTTGCAGCTAAGAATTGAAGCTCAAGGGAAGTACTTACAATCAGTACTGAGAAAAGCTCAAGAATCAATAGCAGGATATGGTTGTTCCTCCGCAGCACTAGAGCGCGCAAAAGCTGAGCTCTCTCAGTTAGCATCCATGGTGAATTCAGGATGTCAGAGTTGTTCATTCTCAGAGCTAACAGAATCAGGAGAATTGAACTTCAAAGACATTGAAAGGAAAGAAGTGAGAGGGACAATGTACTCGATGGAAAGCTCCCTAACATCTTCAGAAAGCTCAGGGCGACGAGAAGAGAAGGAAACAACGGTCGAAAACGCAGAATCTCGAAAGTACAATGAGCCCTCATTAAGCAGAGGGAGGAAGAGAAGAGGAAGCTGCACATCTGATGATTTGTTATCAAATAAAAGATGCACGACTCATAAAGAGGAGGAGAAAGATGGCGAATTCAAAGTTTGTGGAATGATTGATTTGAATAGCCAAGTTCATTATCAGAGTGATATTGATTCAGATGCAGCAGGTGAATTGGAGCCACAGCTGATTGAGTACCTTTAG | 963 | 40.6 | MQNQTMNLVLSTDAKPRLKWTNELHQRFVEGVNNLGGADKATPKSLMRMMGITGLTLYHLKSHLQKYRLGKSQQSETSDQIKLEDFKEIQRQDGPMNEENYDGNQSQMNNESLKISEALQLQLDVQKKLHEQIEVQRHLQLRIEAQGKYLQSVLRKAQESIAGYGCSSAALERAKAELSQLASMVNSGCQSCSFSELTESGELNFKDIERKEVRGTMYSMESSLTSSESSGRREEKETTVENAESRKYNEPSLSRGRKRRGSCTSDDLLSNKRCTTHKEEEKDGEFKVCGMIDLNSQVHYQSDIDSDAAGELEPQLIEYL | 320 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 5710994 | 5712403 | - | evm.model.ptg000015l.893 | HCH4g0893 | 543137 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH4g0893 | 320 | MobiDBLite | consensus disorder prediction | 228 | 265 | - | - | |
HCH4g0893 | 320 | Pfam | MYB-CC type transfactor, LHEQLE motif | 114 | 159 | IPR025756 | - | |
HCH4g0893 | 320 | Gene3D | - | 14 | 72 | - | - | |
HCH4g0893 | 320 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 12 | 72 | IPR017930 | - | |
HCH4g0893 | 320 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 15 | 70 | IPR006447 | GO:0003677(InterPro) | |
HCH4g0893 | 320 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 3 | 272 | IPR046955 | GO:0003700(InterPro) | |
HCH4g0893 | 320 | Pfam | Myb-like DNA-binding domain | 17 | 68 | IPR001005 | - | |
HCH4g0893 | 320 | FunFam | Myb family transcription factor | 14 | 72 | - | - | |
HCH4g0893 | 320 | SUPERFAMILY | Homeodomain-like | 14 | 70 | IPR009057 | - | |
HCH4g0893 | 320 | MobiDBLite | consensus disorder prediction | 216 | 265 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g0893 | HCH-Chr4:5710994 | HCH9g1420 | HCH-Chr9:46720663 | 1.80E-38 | dispersed | |
HCH4g0893 | HCH-Chr4:5710994 | HCH2g0956 | HCH-Chr2:52937380 | 3.10E-30 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33483 | PF00249 | Myb_DNA-binding | 3.30E-07 | CL0123 | HCH | TF |
Pathway information
