Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0896 ATGAGTTTCCATGGTGTTCTCTTGGTGGGTTTTCTAGCACTGGTTTCATCCGCTGATGGGTCTGCTGGAGTAGCTGGATGGACTAACGCTCATGCCACTTTCTATGGTGGCAGTGATGCTTCTGGAACAATGGGTGGAGCTTGTGGATATGGTAATTTATATAGTCAAGGTTATGGGACAAATACTGCAGCTTTAAGCACTGCCCTTTTCAACAATGGCTTAAGCTGTGGATCTTGTTTTGAAATCAAGTGCGTGGGTGATCCCAAATGGTGCCTTCCTGGTTCCATTTTGGTCACTGCTACCAACTTCTGTCCACCAAATAACGCCCTTCCCAACAATGCTGGTGGTTGGTGTAATCCTCCTCTCCACCACTTTGATCTCTCTCAACCCGTTTATCAACACATTGCTCAATACAAAGCTGGAATCGTACCTGTCGCGTATCGAAGGGTACCCTGCAAGAGAAAGGGAGGTATAAGATTCACAATCAATGGACATTCCTACTTCAATTTGGTGTTAATCACCAACGTTGGTGGTGCGGGTGATGTCCATGCTGTTTCAATCAAAGGGTCGAGAAGTGGATGGCAGTCGATGTCTAGAAACTGGGGTCAAAACTGGCAAAACAACAACAATCTCAACGGCCAAACCCTCTCATTTAAGGTCACCACCAGTGATGGCCGTACACTTGTAACCAATAACGTTGCTCCAGCTGGCTGGTCTTTTGGACAGACATTTACCGGTGGTCAATTCCGTTGA 753 46.48 MSFHGVLLVGFLALVSSADGSAGVAGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEIKCVGDPKWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVYQHIAQYKAGIVPVAYRRVPCKRKGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRSGWQSMSRNWGQNWQNNNNLNGQTLSFKVTTSDGRTLVTNNVAPAGWSFGQTFTGGQFR 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5762602 5763555 - evm.model.ptg000015l.896 HCH4g0896 543140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0896 250 Gene3D - 157 249 IPR036749 -
HCH4g0896 250 FunFam Expansin 157 249 - -
HCH4g0896 250 SUPERFAMILY Barwin-like endoglucanases 11 175 IPR036908 -
HCH4g0896 250 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
HCH4g0896 250 PANTHER EXPANSIN-A15 7 249 IPR002963 GO:0009664(InterPro)
HCH4g0896 250 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576(InterPro)
HCH4g0896 250 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
HCH4g0896 250 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576(InterPro)
HCH4g0896 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
HCH4g0896 250 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576(InterPro)
HCH4g0896 250 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
HCH4g0896 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
HCH4g0896 250 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
HCH4g0896 250 PRINTS Expansin signature 115 132 IPR002963 GO:0009664(InterPro)
HCH4g0896 250 PRINTS Expansin signature 96 106 IPR002963 GO:0009664(InterPro)
HCH4g0896 250 PRINTS Expansin signature 232 248 IPR002963 GO:0009664(InterPro)
HCH4g0896 250 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
HCH4g0896 250 PRINTS Expansin signature 168 189 IPR002963 GO:0009664(InterPro)
HCH4g0896 250 PRINTS Expansin signature 156 168 IPR002963 GO:0009664(InterPro)
HCH4g0896 250 PRINTS Expansin signature 203 224 IPR002963 GO:0009664(InterPro)
HCH4g0896 250 PRINTS Expansin signature 132 145 IPR002963 GO:0009664(InterPro)
HCH4g0896 250 Pfam Lytic transglycolase 62 147 IPR009009 -
HCH4g0896 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
HCH4g0896 250 Gene3D - 14 153 IPR036908 -
HCH4g0896 250 CDD DPBB_EXPA_N 26 152 - -
HCH4g0896 250 FunFam Expansin 16 153 - -
HCH4g0896 250 SMART dpbb_1 62 147 IPR007112 -
HCH4g0896 250 Pfam Expansin C-terminal domain 158 235 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1363 HCH-Chr12:34433414 HCH4g0896 HCH-Chr4:5762602 6.70E-94 dispersed
HCH1g0288 HCH-Chr1:45418363 HCH4g0896 HCH-Chr4:5762602 3.20E-110 dispersed
HCH2g1077 HCH-Chr2:53739421 HCH4g0896 HCH-Chr4:5762602 2.50E-102 dispersed
HCH3g1367 HCH-Chr3:51405928 HCH4g0896 HCH-Chr4:5762602 5.80E-99 dispersed
HCH4g0813 HCH-Chr4:5240094 HCH4g0896 HCH-Chr4:5762602 3.20E-94 dispersed
HCH4g0896 HCH-Chr4:5762602 HCH8g1292 HCH-Chr8:48034614 2.40E-118 dispersed
HCH1g0914 HCH-Chr1:57522355 HCH4g0896 HCH-Chr4:5762602 4.90E-124 wgd
HCH13g0724 HCH-Chr13:6105552 HCH4g0896 HCH-Chr4:5762602 2.40E-113 wgd
HCH3g0070 HCH-Chr3:402889 HCH4g0896 HCH-Chr4:5762602 7.20E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0896 - - - 0.0