Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0920 ATGTCGATCTCTTCTTCCTCTGACCTATTCTGTGACGAAGATTCCTCAGGTATCTTATCTAGAGACAGAGACTCACAGGAATTCTCATCGGACCTGGAATCCCCGGCCAGCAGTGAAAAAGAGGATTCTATTTCCATAGCCAGTTTCATACAAGACGAGAGACACTTCGTTCCTGGTATTGACTATTTGTCTCGTTTTCAGTCTCAATCTTTGGATTCTTCCGCAAGAGCAGATTCCGTTGCATGGATTCTCAAGGTTCAAGCTTACTACGCCTTTCAACCACTTACTGCTTACCTCTCCGTAAACTACTTGGATCGATTCCTTTATTCTCGCCGCTTGCCGGAATCAAATGGGTGGGCAATGCAGCTTCTTTCGGTGGCTTGCTTATCACTTGCAGCTAAAATGGAGGAACCTTTGGTCCCTTCCTTATTGGATCTACAGATTGAAGGAGCAAAATATATATTTGAACCTAGAACAATACGTAGGATGGAGCTTCTCGTGCTGACGACTTTAGATTGGCGACTACGATCCGTTACGCCGTTCAGTTTCATTGGATTCTTTGTGTACAAGATTGATCCTAATGGAACATTTTCCAGTTTTCTTAATTCACGCTCTACAGAGATTATACTTTCCAATATCAGAGACGCTAGCTTTCTTGAGTACTGGCCATCATGTATCGCTGCGGCAGCCTTACTTTGTGCAGGAAATGAGATTCCAAATATAACAATTGTGGATCCAGAACATGCTGAATCATGGTGCAATGGACTAAGCAAAGAAAAAATCGTGGGGTGTTATCGCTTAATGCAAGCGTTAACAATGGAGAGTCAGAGATGGAAATCGCCAAAAGTAATACCGCAAATGCGAGTTACAATCGGAGGAAGAAGGAGTTACAATGAGTCATCATCTACATCCATATCCTCATCATCAAGAAGTTCAACATTTGGTTTAAAAAGGAGAAGATTGAATAATTGTGTGTGGGTAGATGATGACAAAGGAAATTCCAAGGTAAGAGCAGACGAATAA 1023 42.03 MSISSSSDLFCDEDSSGILSRDRDSQEFSSDLESPASSEKEDSISIASFIQDERHFVPGIDYLSRFQSQSLDSSARADSVAWILKVQAYYAFQPLTAYLSVNYLDRFLYSRRLPESNGWAMQLLSVACLSLAAKMEEPLVPSLLDLQIEGAKYIFEPRTIRRMELLVLTTLDWRLRSVTPFSFIGFFVYKIDPNGTFSSFLNSRSTEIILSNIRDASFLEYWPSCIAAAALLCAGNEIPNITIVDPEHAESWCNGLSKEKIVGCYRLMQALTMESQRWKSPKVIPQMRVTIGGRRSYNESSSTSISSSSRSSTFGLKRRRLNNCVWVDDDKGNSKVRADE 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5898673 5900684 - evm.model.ptg000015l.920 HCH4g0920 543164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0920 340 SUPERFAMILY Cyclin-like 160 284 IPR036915 -
HCH4g0920 340 CDD CYCLIN_AtCycD-like_rpt1 75 173 - -
HCH4g0920 340 SMART Cyclin_C_2 178 287 IPR004367 -
HCH4g0920 340 CDD CYCLIN_AtCycD-like_rpt2 178 268 - -
HCH4g0920 340 Gene3D - 48 238 - -
HCH4g0920 340 MobiDBLite consensus disorder prediction 1 40 - -
HCH4g0920 340 MobiDBLite consensus disorder prediction 15 38 - -
HCH4g0920 340 Gene3D - 59 176 - -
HCH4g0920 340 Pfam Cyclin, C-terminal domain 178 277 IPR004367 -
HCH4g0920 340 SUPERFAMILY Cyclin-like 46 175 IPR036915 -
HCH4g0920 340 ProSitePatterns Cyclins signature. 76 107 IPR048258 -
HCH4g0920 340 SMART cyclin_7 81 169 IPR013763 -
HCH4g0920 340 Pfam Cyclin, N-terminal domain 47 176 IPR006671 -
HCH4g0920 340 PANTHER CYCLINS 33 276 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH4g0920 340 FunFam D2/4-type cyclin 59 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1196 HCH-Chr13:39144535 HCH4g0920 HCH-Chr4:5898673 1.30E-40 dispersed
HCH14g0361 HCH-Chr14:32617438 HCH4g0920 HCH-Chr4:5898673 1.30E-29 dispersed
HCH1g1001 HCH-Chr1:58081141 HCH4g0920 HCH-Chr4:5898673 1.70E-119 dispersed
HCH2g0781 HCH-Chr2:51483674 HCH4g0920 HCH-Chr4:5898673 3.60E-26 dispersed
HCH4g0259 HCH-Chr4:1606933 HCH4g0920 HCH-Chr4:5898673 9.20E-47 dispersed
HCH4g0589 HCH-Chr4:3889712 HCH4g0920 HCH-Chr4:5898673 6.60E-30 dispersed
HCH4g0920 HCH-Chr4:5898673 HCH4g1861 HCH-Chr4:48653593 1.90E-38 dispersed
HCH4g0920 HCH-Chr4:5898673 HCH11g0922 HCH-Chr11:40454716 4.80E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0920 K18810 - csv:101210686 531.946