Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0940 ATGGCAGACGAAGCTCAGATTGATTTGAATGATCAGGTGGCAGAAATTGCGCCTTTTGATCCAACTAAGAAGAAGAAGAAGAAGAAAGTTGTAATTCAGGAACCGGCTGATGACTCTGTTGACAAGTTAACTGAGAAAACCGAAAGCTTGTCAGTTTCTGATGGACTTGATAATACCTTTTCTGGGCTTAAAAAGAAGAAGAAAAAGACAGTGGAGACTAGCACCTTGAATGATGAGAGTGCTGATGTCGGTGAGGACTTAGAAGATCAACTAGGAGAGAACGAAGAACCAGCGGGAATTGTTCTGCAATCTCGTTATCCTTGGGAAGGAAGTGACCGTGATTATCAATATGAGGAGCTTCTTGGTAGGGTGTTCAACATTCTTCGAGAGAATAATCCAGAGCTTGCAGGAGATAGGCGCCGAACAGTTATGAGGCCTCCACAGGTTCTTCGTGAAGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGCAAAACGATGCATCGGCAGCCAGATCATGTTATGGCTTTCTTATTGGCTGAACTGGGAACTAGTGGATCTCTTGATGGGCAGCAGAGATTAGTTGTTAAAGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGTCGATATGTCAATGAATATGTCATTTGTATTGGGTGCAAGAGTCCAGACACGATCCTTTCAAAGGAGAATCGGCTTTTCTTTCTTAGATGCGAGAAGTGTGGTTCTGGACGATCGGTTGCTCCAATCAAAGCTGGTTTTGTTGCTCGTGTTGGTCGTAGGAACGCAGGCGCGTGA 810 43.7 MADEAQIDLNDQVAEIAPFDPTKKKKKKKVVIQEPADDSVDKLTEKTESLSVSDGLDNTFSGLKKKKKKTVETSTLNDESADVGEDLEDQLGENEEPAGIVLQSRYPWEGSDRDYQYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGA 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6027481 6032071 - evm.model.ptg000015l.940 HCH4g0940 543184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0940 269 MobiDBLite consensus disorder prediction 30 48 - -
HCH4g0940 269 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 218 253 IPR016190 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH4g0940 269 Gene3D - 112 254 - -
HCH4g0940 269 FunFam Eukaryotic translation initiation factor 2 subunit 112 254 - -
HCH4g0940 269 Pfam Domain found in IF2B/IF5 138 247 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH4g0940 269 SMART eIF2Bneu4 139 248 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH4g0940 269 MobiDBLite consensus disorder prediction 79 93 - -
HCH4g0940 269 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 114 221 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH4g0940 269 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 25 256 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005850(PANTHER)|GO:0006413(InterPro)|GO:0031369(PANTHER)
HCH4g0940 269 MobiDBLite consensus disorder prediction 18 98 - -
HCH4g0940 269 MobiDBLite consensus disorder prediction 60 75 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0973 HCH-Chr2:53047527 HCH4g0940 HCH-Chr4:6027481 3.20E-116 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0940 K03238 - csv:101220978 473.396