Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0944 ATGTTTCCATGGGGAGGTCTTAGTTGCTGTTTGAGTGCAGCTGCTCTTTACCTTCTTGGAAGGAGCAGTGGCAGGGATGCGGAGTTACTCAAATCTGTCACACGAGTCAGTCAGTTGAAGGAATTGGCTCAATTGCTTGAAGCTGAATCTGTATTACCTCTTGTTGTTGCAATTACTGGAAGAGTTAGCTCTGATACACCGATAAATTGTGAGTTTAGTGGTCTACGGGGTGTAATTGTGGAGGAAACGGCAGAACAACACTTTTTAAAGCACAATGATTCAGGATCGTGGATTCAGGATTCTGCTCTGATGCTCTCCATGAGTAAAGAAGTTCCATGGTACCTGGATGATGGGACTGGTCGTGCATTTGTGGTGGGAGCCCGTAGTGCCACAAGTTTTGCATTACCCGTAGTGAATGAGATATTTGAAGAGTCTGGCAGATCCCTTGTCCGTGGCACATTGGATTATCTCCAAGGTCTTAAGATGCTTGGAGTTAAGCGAATAGAGCGGTTACTACCCACCGGTGCTTCCTTGACTGTAGTTGGTGAGGCTGCCAAGGATGACATTGGTACCATCAGATTACAACGACCACACAAAGGGCCATTTTATGTCTCCCCTAAAACAATCGATCAACTCATCAGCAATCTTGGGAAGTGGGCAAGGTGGTACAAGTACGCTTCCATGGGTTTGAGCATATTTGGTCTGTATCTGGTCATGAAACATGCTGTTCTTTATGTCATGGAGAGAAGACGTCGCTGGGAGTTGCAGAAAAGGGTCCTAGCTGCAGCTGCCAAGAGATTAGGACAAGAAAATGAAGGGGAAAATGACAAAGATGGCAATGGATCAGATGGTATGAAGAGAGACCGGTCAATGCCTGACCTTTGTGTAATATGTCTTGAGAGAGACTACAATGCTGTTTTTGTCCCGTGCGGTCACATGTGTAGTTGTATGGCATGTTGTTCACAATTGACAAACTGTCCTCTCTGTCGGCGGCGAATTGAGATGGTAGTAAAGACTTTCCGCCATTGA 1029 45.77 MFPWGGLSCCLSAAALYLLGRSSGRDAELLKSVTRVSQLKELAQLLEAESVLPLVVAITGRVSSDTPINCEFSGLRGVIVEETAEQHFLKHNDSGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARSATSFALPVVNEIFEESGRSLVRGTLDYLQGLKMLGVKRIERLLPTGASLTVVGEAAKDDIGTIRLQRPHKGPFYVSPKTIDQLISNLGKWARWYKYASMGLSIFGLYLVMKHAVLYVMERRRRWELQKRVLAAAAKRLGQENEGENDKDGNGSDGMKRDRSMPDLCVICLERDYNAVFVPCGHMCSCMACCSQLTNCPLCRRRIEMVVKTFRH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6053021 6057519 + evm.model.ptg000015l.944 HCH4g0944 543188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0944 342 Pfam Zinc finger, C3HC4 type (RING finger) 293 335 - -
HCH4g0944 342 SUPERFAMILY RING/U-box 294 336 - -
HCH4g0944 342 FunFam Baculoviral IAP repeat containing 7 304 340 - -
HCH4g0944 342 PANTHER - 1 339 IPR044231 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH4g0944 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 341 IPR013083 -
HCH4g0944 342 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
HCH4g0944 342 Pfam E3 Ubiquitin ligase 85 235 IPR022170 GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0944 HCH-Chr4:6053021 HCH7g1335 HCH-Chr7:46242178 4.00E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0944 K15688 - csv:101218196 621.313