Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0953 ATGTCCATTTCTCTCTTCCCTCTCTTCATCACCATACTCTCTGTCTCTCTCTTCCCTTCCCCTTCTCTCTCCATTCAGTGCCCTCTCGATTTCACCCTTCTTCTTCCATTCATCCAATCCGCCCCCAATAATCTCGATTCTTCCACCGCTTTAAAATGCCAATATATCCGACAAGGCCTTCGTCTTGTCCAATCCCAGTACCTCAAACTCACTGGTTCATTCTTACCTCCTCTCAATTCCTCTGAATCTTGCTGGGATTCTTACCAATCCCTTATCGATGATGACGGTACGTGGCCGAATTTCGATATTCGAAACTCTTGTGGTTTTCAAACCCGTTGGATTTCTCAGGGTTGTATGAATATCAGTACTAGATTTGAGTTTGAGAGGATTGTGCCCAAATCGGTGCTGGATAGTGTTGTTGCCAATTGTAATCAGTCTCTTGAGAATGGTTCGCCGTGTGCTTCGTGTATGACGAGGGTTTCGGTCTTGCAAGCTTCTTACTTGACTGGTCCTTCCATTGGTAATATCTCTGATTGCCCTGCTTTTCCTTTGATGTATGCTGCTGCGTTTGCGAATCGGTTTGGACCTACTGATCAAGGGACTGCTAAGTGTATATTTTCGCTTGATGTTGGCTCGTTAGGGTCGGGGTCAAGGAGTAAGAAGCGGAATGTGGTGGTTTTGGGAGTTTTGATTAGTTGTGGTATTGGGGTGATGGTGGTTATTGCTGGATGTTGGTTTTGTCAGAGGAAATATGATGTGGTTAGGATGTGGAGGAGGGGGGATGATGGTATTGGGAGAGTTGAGACGGGGATGGCATCGGGGTTGGAGTCGATTAGTGAAAGTACTAGTTTGGTGAAGTTCACTTTCGATGAAATTAGGAAGGCGACAAAGAGTTTCACTAGGGATGGTATAATTGGGAGAGGGGGGTATGGTAATGTTTATAAGGGTTTTCTATCAGATGGTTCAGAAGTTGCATTGAAGAGGTTCAAGAATTGTTCAGCAGCTGGTGATGCTGTTTTCGCTCATGAAGTGGAGGTCATTTCCAGCGTGAGGCACGTTAATCTAGTTCCTTTAAGAGGGTATTGCATTGCAACTACTCCTTTGGAGGGTCACCAGAGAATAATTGTATGTGATTTGATGAAGAATGGAAGTCTTTATGATCATTTATTTGGGTTTTCTGATAAGAAGCTTAGTTGGCCAATTAGGCAAAAGATTGCACTTGGGACTGCTAGGGGTTTAGCTTATTTGCATTACGGAGCTCAGCCGGGTATTATCCATAGGGATATCAAAGCTAGCAATATACTTTTGGATGAAAATTTTGAGGCAAAGGTAGCTGATTTTGGTTTGGCTAAGTTTACTCCAGAAGGAATGACCCATTTGAGCACAAGAGTGGCTGGAACCATGGGGTATGTGGCTCCAGAATATGCATTATATGGGCAATTGACAGAGAGAAGTGATGTGTATAGCTTTGGTGTCGTTTTACTTGAACTTTTGAGTGGAAGGAAGGCCCTTGGAGTGAGTAGCCATGATAGTCAACCCTTTCTAGTGACTGATTGGGCATGGTCATTAGTAAGGGAAGAAAGAGCTATGAGTGTTATCGAAGAGGGCATACCGGACTTGGGTACCCCAGAGGTGGTTGAGAAATATGTACTGGTTGCTGTTCTATGTTCTCATCCACAGCTATATGCTAGGCCGACAATGGATCAGGTTGTGAAAATGTTGGAAACAGATCTTTCTGTTCCTTCGATACCAGAGCGACCAATTCCTCTAGTTGCTGAGATTGATGAAATAGAGAGATCCATGAGCAGTAGTGACTCTGGTCAGCTTTCTGGTTCAGCTGGCTTTCAGAGATATATATTAAACAATGACCACAAGTAG 1878 43.93 MSISLFPLFITILSVSLFPSPSLSIQCPLDFTLLLPFIQSAPNNLDSSTALKCQYIRQGLRLVQSQYLKLTGSFLPPLNSSESCWDSYQSLIDDDGTWPNFDIRNSCGFQTRWISQGCMNISTRFEFERIVPKSVLDSVVANCNQSLENGSPCASCMTRVSVLQASYLTGPSIGNISDCPAFPLMYAAAFANRFGPTDQGTAKCIFSLDVGSLGSGSRSKKRNVVVLGVLISCGIGVMVVIAGCWFCQRKYDVVRMWRRGDDGIGRVETGMASGLESISESTSLVKFTFDEIRKATKSFTRDGIIGRGGYGNVYKGFLSDGSEVALKRFKNCSAAGDAVFAHEVEVISSVRHVNLVPLRGYCIATTPLEGHQRIIVCDLMKNGSLYDHLFGFSDKKLSWPIRQKIALGTARGLAYLHYGAQPGIIHRDIKASNILLDENFEAKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVYSFGVVLLELLSGRKALGVSSHDSQPFLVTDWAWSLVREERAMSVIEEGIPDLGTPEVVEKYVLVAVLCSHPQLYARPTMDQVVKMLETDLSVPSIPERPIPLVAEIDEIERSMSSSDSGQLSGSAGFQRYILNNDHK 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6123489 6125366 - evm.model.ptg000015l.953 HCH4g0953 543197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0953 625 PANTHER OS01G0750732 PROTEIN 47 604 IPR050885 -
HCH4g0953 625 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524(InterPro)
HCH4g0953 625 SUPERFAMILY Protein kinase-like (PK-like) 275 575 IPR011009 -
HCH4g0953 625 Gene3D Phosphorylase Kinase; domain 1 267 378 - -
HCH4g0953 625 Pfam Protein kinase domain 300 512 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0953 625 CDD STKc_IRAK 305 575 - -
HCH4g0953 625 Pfam SPARK 25 179 IPR043891 -
HCH4g0953 625 SMART serkin_6 299 574 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0953 625 ProSiteProfiles Protein kinase domain profile. 299 578 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0953 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g0953 625 Gene3D Transferase(Phosphotransferase) domain 1 380 580 - -
HCH4g0953 625 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 263 378 - -
HCH4g0953 625 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 380 582 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0953 HCH-Chr4:6123489 HCH6g0245 HCH-Chr6:3531102 2.10E-70 dispersed
HCH11g0850 HCH-Chr11:39332078 HCH4g0953 HCH-Chr4:6123489 1.90E-98 transposed
HCH12g0835 HCH-Chr12:5452407 HCH4g0953 HCH-Chr4:6123489 7.50E-94 transposed
HCH4g0953 HCH-Chr4:6123489 HCH6g1645 HCH-Chr6:49442730 2.10E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81463 PF00069 Pkinase 1.50E-40 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0953 - - - 0.0