Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g0977 | ATGGATTCAAGTCTTGGAACTTCTGCATTGAATTTCGGGTTGAAAACAGACCCTGAAGAGGCTCATATCACATTCTTTATCTTGCTTCTATGTGCTTCCATGGTTATTAGTCATCTTTTTGAGAAGAAACGTTGGCTTAATGAATCAATTACTGCTCTGATCATTGGTCTTTTCTCTGGAACTCTCATTCTACTGATAACTAAAGGAAAAAGTTCTCACATCCTGGTGTTTAATGAACGACTCTTCTTCATTTATCTTCTTCCACCTATAATATTCAACGCTGGGTTTCGGATGAAGAAGAAACAATTTTTCCACAACTTTTTTACAATAATATCGTTTGGTGCTGTTGGAAGTGTGATATCATTTTTCATCATATCACTAGGTTCACTCCATTTATTCAAGAAATTCGGTATTGGCGTCTTAGACATGCGTACTTACTTTGCACTTGGAGCAATCTTCACAGCTACAGATAGTATTTGCACCTTGCAGATTCTTAATCAAGCTGAAACACCCTTACTTCATAGTCTAGTTTTTGGCGAAGGTGTGATCAATGATGCTACCTCAGTGGTACTTTTCCATGCAATTCAGATATTTGACCTCTCTCACATCTCAACCAATGCCATTCAGCTTATTGGAAATTTCTCAATTTTGTTCTTCCAAAGCACATTGCTGGGATTAGCAATTGGGTTACTAAGTGCATTCATCATTAAGAAACTATATTTTGACAGGCACTCTACTGATCATGAAGTTGCTCTGATGATTTTGATGGCTTACCTTTCATATATGATTGCTGAAGTGTGGCTTCTTAGTAGTATCCTCAGTGTGTTCTTTTGTGGGATTGTCATGTCTCACTACACTTGGTATAATGTGAATGAAAGTTCAAAACAGACATCCAGCCATATTTTTGCAACGCTGTCGTCCGTTGCAGAGATTTTCATCTTCCTTTATGTTGGTATGGATTCCTTGGATATTGATAAGTGGAAAATTGTTAGAGCTAGCCCCGGGAGGTTAGTCGGAGTGAGCCTGATACTGCTAGGACTTGTTCTTGTTGGAAGAGCAGCATTTGTATTCCCACTCTCTTTCATATCAAACTTAACTAGAAAGGATAGCAACGAAAAGATTGGGCTAAAGCAGCAGATCACAATTTGGTGGGCTGGGCTCATGAGAGGTGCTGTTTCGATGGCGCTGGCTTATAATCAATTTACAAAGGCAGGGCAGAATCAACTGCAAGGGAATTCAATCATGATAACTAGCACCATAACAGTTGTTCTCTTCACTAATTTGGTATGTGGATTATTCACTAAGCCTCTAATAAGATACATGTTTCCTATGCATAAAGAGAGAGACAACACATTAGATACAAGTTTCCCTATACTGCAATCGTTAAGTGATTCGCTTCTGCTCAAAGCTGAACTCGTATCTCATACGGATGGACCGGAGGCGCCTCATCCAATGAGTACTCGCCTTTTCTTCACTACCCCGACTCGATCCATCCATTACTATTGGCGGCAGTTTGATGCTCGTTTTATGCGTCCCGTGTTTGGAGGGGGTGGATTGGCATTACAACCTTCTATTCCTGGTTCAATCATTGACAGGATTATCCTTTGA | 1608 | 39.8 | MDSSLGTSALNFGLKTDPEEAHITFFILLLCASMVISHLFEKKRWLNESITALIIGLFSGTLILLITKGKSSHILVFNERLFFIYLLPPIIFNAGFRMKKKQFFHNFFTIISFGAVGSVISFFIISLGSLHLFKKFGIGVLDMRTYFALGAIFTATDSICTLQILNQAETPLLHSLVFGEGVINDATSVVLFHAIQIFDLSHISTNAIQLIGNFSILFFQSTLLGLAIGLLSAFIIKKLYFDRHSTDHEVALMILMAYLSYMIAEVWLLSSILSVFFCGIVMSHYTWYNVNESSKQTSSHIFATLSSVAEIFIFLYVGMDSLDIDKWKIVRASPGRLVGVSLILLGLVLVGRAAFVFPLSFISNLTRKDSNEKIGLKQQITIWWAGLMRGAVSMALAYNQFTKAGQNQLQGNSIMITSTITVVLFTNLVCGLFTKPLIRYMFPMHKERDNTLDTSFPILQSLSDSLLLKAELVSHTDGPEAPHPMSTRLFFTTPTRSIHYYWRQFDARFMRPVFGGGGLALQPSIPGSIIDRIIL | 535 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 6268901 | 6273142 | - | evm.model.ptg000015l.977 | HCH4g0977 | 543221 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g0977 | 535 | Gene3D | - | 142 | 193 | - | - | |
| HCH4g0977 | 535 | Pfam | Sodium/hydrogen exchanger family | 32 | 438 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| HCH4g0977 | 535 | PRINTS | Na+/H+ exchanger signature | 150 | 160 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH4g0977 | 535 | PRINTS | Na+/H+ exchanger signature | 110 | 118 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH4g0977 | 535 | PRINTS | Na+/H+ exchanger signature | 95 | 109 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH4g0977 | 535 | PRINTS | Na+/H+ exchanger signature | 81 | 92 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH4g0977 | 535 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 18 | 520 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(InterPro)|GO:0015385(PANTHER)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH3g1040 | HCH-Chr3:14586478 | HCH4g0977 | HCH-Chr4:6268901 | 4.60E-42 | dispersed | |
| HCH4g0977 | HCH-Chr4:6268901 | HCH8g0159 | HCH-Chr8:6006909 | 1.60E-172 | dispersed | |
| HCH4g0977 | HCH-Chr4:6268901 | HCH4g0978 | HCH-Chr4:6274160 | 4.20E-197 | tandem | |
| HCH4g0977 | HCH-Chr4:6268901 | HCH6g1660 | HCH-Chr6:49508646 | 1.00E-179 | wgd |
Pathway information