Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g0978 | ATGGATTTAGGGAAATCTGTGATGAATTTCGCGTTGAAAGAAGATCTGGAAGAGGCCCATATCACATTGTTTGTGTTGCTTCTTTGTGCTTGCATTGTAATTGGTCATCTTCTAGAGAAAAATCGTTGGATGAATGAATCGATTACTGCCATAGTCATTGGTCTTTTCACTGGAATTCTCATCCTATTTACTACTGAAGGCAAAAACTCTCGCATCCTAGTTTTTAGTGAAGATCTTTTCTTCATTTACGTTCTTCCGCCTATAATATTTAATGCTGGGTTTCAGGTGAAGAAGAAACAGTTCTTTCGAAACTTCATGACAATCATGTTGTTTGGTGCTGTTGGTAGTGTGATCTCATTTTTCATCATATCACTAGGTTCACTCCAGTTATTCAAAAAATTGGATATTGGCTTCTTAGATGCGGGTGATTATTTTGCCCTTGGAGCAATTTTAACAGCAACAGATAGTGTTTGCACTTTGCAGGTTATTAATCAGGATGAAACTCCTTTACTATATAGTCTTGTCTTTGGTGAAGGTGTGGTCAATGATGCTGCTTCTGTTGTTCTTTTCAAAGCAATACAGAGGTTTGACCTCTCTCATATCACCTCGATGAATGGCATTCGGCTTGTTGGAGATTTTTTCTATTTGTTCTTGACAAGCACTCTACTAGGAGTAATAGTTGGGCTGTCAAGTGCATATATTATAAAGAAACTATACTTCGGCAGGCACTCAACTGATCGGGAAGTTGCTTTGATGATTTTAATGCCTTACCTGTCATATATGACTGCTGAATTATGCAATCTTAGTGGTATTCTTACGATGTTCTTTTGTGGGATTGTCATGTCTCATTACACTTGGCATAATGTAACTGAAAGTTCAAGAGTGACCACCAAGCACACTTTTGCAACATTATCATCTGTTTCAGAGATTTTCATCTTCTTATATGTTGGTATGGACGCCCTGGATATTGAGAAGTGGAAAGTTGTTAGCCAAAGGCGTTGGACATCAGCTGGAGTGAGTCTGATACTGCTAGGTCTAGTCTTTGTTGGGAGAGCAGCTTTTGTATTTCCACTCTCTTTTATATCCAACTTGACTAAAAAGTCTCAGAGTGAAAAACTTGGGTTTAACCAGCAGGTTGCAATCTGGTGGGCTGGGCTCATGAGAGGTGCTGTATCAGTGGCCCTTGCTTATAATCAGTTTACAAGGTCTGGGCACACTCAACTGCAAGGGAATGCCATCATGATAACTAGCACAATCACAATTGTTCTCTTTACCAATGTGGTATGTGGACTATTTACAAAGCCTATTATAAGGAACATGCTTTCACTAAATCAACAGGCAGACAGCGCAACAGGAGCAGACTCGCCTAGGTATCCACTTTTGTCCAATGGCGAAGATCTCGAGTCTGATGCGAGAGGAGCGAACATTCCCCGTTCAACCAGTTTACGGGAGCTGTTAACAACTCCAAGTCGCTCCATCCATCACCATTGGCGGACGTTTGATGATCGATACATGCGTCCCGTGTTTGGTGGGCGAGGTTTTGTACCTTTCATTCCCGGTTCACCTACTGAAAAGTATATCCATTGA | 1587 | 40.77 | MDLGKSVMNFALKEDLEEAHITLFVLLLCACIVIGHLLEKNRWMNESITAIVIGLFTGILILFTTEGKNSRILVFSEDLFFIYVLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGSVISFFIISLGSLQLFKKLDIGFLDAGDYFALGAILTATDSVCTLQVINQDETPLLYSLVFGEGVVNDAASVVLFKAIQRFDLSHITSMNGIRLVGDFFYLFLTSTLLGVIVGLSSAYIIKKLYFGRHSTDREVALMILMPYLSYMTAELCNLSGILTMFFCGIVMSHYTWHNVTESSRVTTKHTFATLSSVSEIFIFLYVGMDALDIEKWKVVSQRRWTSAGVSLILLGLVFVGRAAFVFPLSFISNLTKKSQSEKLGFNQQVAIWWAGLMRGAVSVALAYNQFTRSGHTQLQGNAIMITSTITIVLFTNVVCGLFTKPIIRNMLSLNQQADSATGADSPRYPLLSNGEDLESDARGANIPRSTSLRELLTTPSRSIHHHWRTFDDRYMRPVFGGRGFVPFIPGSPTEKYIH | 528 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 6274160 | 6279692 | - | evm.model.ptg000015l.978 | HCH4g0978 | 543222 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g0978 | 528 | MobiDBLite | consensus disorder prediction | 449 | 481 | - | - | |
| HCH4g0978 | 528 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 17 | 518 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(InterPro)|GO:0015385(PANTHER)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| HCH4g0978 | 528 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 31 | - | - | |
| HCH4g0978 | 528 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 119 | 156 | IPR000595 | - | |
| HCH4g0978 | 528 | Gene3D | - | 140 | 192 | - | - | |
| HCH4g0978 | 528 | PRINTS | Na+/H+ exchanger signature | 93 | 107 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH4g0978 | 528 | PRINTS | Na+/H+ exchanger signature | 108 | 116 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH4g0978 | 528 | PRINTS | Na+/H+ exchanger signature | 79 | 90 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH4g0978 | 528 | PRINTS | Na+/H+ exchanger signature | 148 | 158 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH4g0978 | 528 | Pfam | Sodium/hydrogen exchanger family | 31 | 437 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| HCH4g0978 | 528 | NCBIfam | sodium/hydrogen exchanger 3 | 19 | 446 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH4g0978 | HCH-Chr4:6274160 | HCH8g0159 | HCH-Chr8:6006909 | 4.60E-204 | dispersed | |
| HCH4g0977 | HCH-Chr4:6268901 | HCH4g0978 | HCH-Chr4:6274160 | 4.20E-197 | tandem |
Pathway information