Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0997 ATGGATGATAACAAAGGCAAGTCAAAGAGGGGAGAATTCAAGTATGATTTTGGAGCTGGAGTTTGCAGCACTGGAGGCTCAAGTGAAGAAGCCGCTGTCACGGGAGGTGGTGAAGGAGGAGTAGCGAAAGAACAAGATCGGCTGCTTCCAATAGCAAATGTTGGTAGGATTATGAAGAAAATTCTGCCTCCAAATGCAAAAATCTCAAAAGAAGCTAAAGAAACAATGCAAGAATGTGTATCTGAGTTCATAAGCTTTGTGACAGGAGAAGCATCTGATAAGTGCCATAAAGAGAAGAGAAAGACAGTTAATGGAGATGACATCTGCTGGGCTTTGGCTACTCTTGGCTTTGATGATTATGCTGAGCCTTTGAAAAGGTATTTGTCTAAGTATAGGGAAATGGAAGGTGAAAGAGCTGCTCATCAAAATAATAAGGGTTGCAATCATGATGATGATGATCCATGA 465 41.29 MDDNKGKSKRGEFKYDFGAGVCSTGGSSEEAAVTGGGEGGVAKEQDRLLPIANVGRIMKKILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLSKYREMEGERAAHQNNKGCNHDDDDP 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6415358 6415822 + evm.model.ptg000015l.997 HCH4g0997 543241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0997 154 ProSitePatterns NF-YB/HAP3 subunit signature. 79 95 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0997 154 Coils Coil 124 144 - -
HCH4g0997 154 SUPERFAMILY Histone-fold 45 146 IPR009072 GO:0046982(InterPro)
HCH4g0997 154 PRINTS CCAAT-binding transcription factor subunit A signature 114 132 - -
HCH4g0997 154 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
HCH4g0997 154 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
HCH4g0997 154 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 39 145 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
HCH4g0997 154 MobiDBLite consensus disorder prediction 135 154 - -
HCH4g0997 154 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 48 112 IPR003958 -
HCH4g0997 154 FunFam Nuclear transcription factor Y subunit B-3 37 153 - -
HCH4g0997 154 Gene3D Histone, subunit A 40 153 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0653 HCH-Chr2:50302037 HCH4g0997 HCH-Chr4:6415358 4.20E-41 dispersed
HCH4g0997 HCH-Chr4:6415358 HCH6g0875 HCH-Chr6:43600627 9.40E-41 dispersed
HCH4g0997 HCH-Chr4:6415358 HCH6g1682 HCH-Chr6:49628191 8.80E-39 wgd
HCH4g0997 HCH-Chr4:6415358 HCH8g0114 HCH-Chr8:4866571 6.10E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33488 PF00808 CBFD_NFYB_HMF 8.60E-28 CL0012 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0997 K08065 - csv:101204763 218.009