Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0997 ATGGATGATAACAAAGGCAAGTCAAAGAGGGGAGAATTCAAGTATGATTTTGGAGCTGGAGTTTGCAGCACTGGAGGCTCAAGTGAAGAAGCCGCTGTCACGGGAGGTGGTGAAGGAGGAGTAGCGAAAGAACAAGATCGGCTGCTTCCAATAGCAAATGTTGGTAGGATTATGAAGAAAATTCTGCCTCCAAATGCAAAAATCTCAAAAGAAGCTAAAGAAACAATGCAAGAATGTGTATCTGAGTTCATAAGCTTTGTGACAGGAGAAGCATCTGATAAGTGCCATAAAGAGAAGAGAAAGACAGTTAATGGAGATGACATCTGCTGGGCTTTGGCTACTCTTGGCTTTGATGATTATGCTGAGCCTTTGAAAAGGTATTTGTCTAAGTATAGGGAAATGGAAGGTGAAAGAGCTGCTCATCAAAATAATAAGGGTTGCAATCATGATGATGATGATCCATGA 465 41.29 MDDNKGKSKRGEFKYDFGAGVCSTGGSSEEAAVTGGGEGGVAKEQDRLLPIANVGRIMKKILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLSKYREMEGERAAHQNNKGCNHDDDDP 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6415358 6415822 + evm.model.ptg000015l.997 HCH4g0997 543241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0997 154 ProSitePatterns NF-YB/HAP3 subunit signature. 79 95 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0997 154 Coils Coil 124 144 - -
HCH4g0997 154 SUPERFAMILY Histone-fold 45 146 IPR009072 GO:0046982(InterPro)
HCH4g0997 154 PRINTS CCAAT-binding transcription factor subunit A signature 114 132 - -
HCH4g0997 154 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
HCH4g0997 154 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
HCH4g0997 154 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 39 145 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
HCH4g0997 154 MobiDBLite consensus disorder prediction 135 154 - -
HCH4g0997 154 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 48 112 IPR003958 -
HCH4g0997 154 FunFam Nuclear transcription factor Y subunit B-3 37 153 - -
HCH4g0997 154 Gene3D Histone, subunit A 40 153 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0997 K08065 - - csv:101204763 218.009
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0653 HCH-Chr2:50302037 HCH4g0997 HCH-Chr4:6415358 4.20E-41 dispersed
HCH4g0997 HCH-Chr4:6415358 HCH6g0875 HCH-Chr6:43600627 9.40E-41 dispersed
HCH4g0997 HCH-Chr4:6415358 HCH6g1682 HCH-Chr6:49628191 8.80E-39 wgd
HCH4g0997 HCH-Chr4:6415358 HCH8g0114 HCH-Chr8:4866571 6.10E-32 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH6g0880 . 51 151 CCAAT-HAP3 Transcription Factor Family AT5G47670 85.1 3.5e-47 185.3
HCH2g0653 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.6 2.3e-38 156.0
HCH6g0880 . 53 173 CCAAT-HAP3 Transcription Factor Family AT1G21970 74.0 2.9e-49 192.2
HCH2g0653 . 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.7 1.2e-57 219.5
HCH6g0875 . 1 131 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.1 1.7e-48 189.1
HCH13g1276 . 22 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 90.9 1.2e-46 183.0
HCH11g0246 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.6 8.7e-45 176.8
HCH1g0524 . 11 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.4 2.8e-43 171.8
HCH4g0997 . 43 146 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.1 5.8e-41 164.1
HCH4g0997 . 44 148 CCAAT-HAP3 Transcription Factor Family AT1G09030 71.4 1.5e-37 152.5
HCH8g0114 . 6 117 CCAAT-HAP3 Transcription Factor Family AT1G09030 65.2 3.4e-37 151.4
HCH1g0524 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.2 1.2e-48 189.5
HCH11g0246 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 3.6e-48 188.0
HCH2g0653 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.6 5.9e-43 170.6
HCH6g0875 . 1 118 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 1.0e-42 169.9
HCH13g1276 . 8 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.2 2.5e-41 165.2
HCH4g0997 . 35 134 CCAAT-HAP3 Transcription Factor Family AT2G38880 74.0 3.2e-41 164.9
HCH4g0997 . 41 152 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.8 6.0e-46 180.6
HCH2g0653 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.4e-39 157.5
HCH6g0875 . 27 122 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 9.2e-39 156.8
HCH13g1276 . 25 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.0 1.0e-37 153.3
HCH11g0246 . 24 119 CCAAT-HAP3 Transcription Factor Family AT2G47810 70.8 8.6e-37 150.2
HCH11g0246 . 1 174 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.1 1.5e-63 239.2
HCH1g0524 . 1 171 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.2 4.5e-55 211.1
HCH2g0653 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.5 1.2e-44 176.4
HCH6g0875 . 1 121 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.5 1.5e-42 169.5
HCH13g1276 . 24 117 CCAAT-HAP3 Transcription Factor Family AT2G37060 80.9 1.4e-40 162.9
HCH4g0997 . 42 137 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.9 5.0e-38 154.5
HCH2g0653 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 2.0e-44 176.0
HCH13g1276 . 12 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.1 2.6e-44 175.6
HCH11g0246 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.7 1.3e-43 173.3
HCH4g0997 . 43 138 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.2 5.9e-41 164.5
HCH6g0875 . 27 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 78.1 5.9e-41 164.5
HCH1g0524 . 26 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.7 4.3e-39 158.3
HCH2g0653 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 1.3e-52 203.0
HCH6g0875 . 1 131 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 8.9e-49 190.3
HCH11g0246 . 11 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 75.0 3.0e-44 175.3
HCH13g1276 . 20 123 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.8 3.9e-44 174.9
HCH1g0524 . 26 125 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.0 1.1e-41 166.8
HCH4g0997 . 43 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 3.1e-41 165.2
HCH11g0246 . 12 174 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.7 1.2e-60 229.6
HCH1g0524 . 1 171 CCAAT-HAP3 Transcription Factor Family AT3G53340 65.6 4.2e-53 204.5
HCH2g0653 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 4.3e-45 177.9
HCH13g1276 . 13 163 CCAAT-HAP3 Transcription Factor Family AT3G53340 58.8 2.2e-41 165.6
HCH6g0875 . 1 121 CCAAT-HAP3 Transcription Factor Family AT3G53340 65.1 2.9e-41 165.2
HCH4g0997 . 24 137 CCAAT-HAP3 Transcription Factor Family AT3G53340 65.0 1.3e-38 156.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005137 2 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 2 2 2 5 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33488 PF00808 CBFD_NFYB_HMF 8.60E-28 CL0012 HCH TF