Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0998 ATGGCAATAGAGGAAATGGAAACCGAAAACGGAAACAACCTGCAAGAAAGTTCCGATTCCGAAACAAGCCGAGAAGTCGGAGGAAAGAGGGTTTCTCATGAATCCTTACGAAGAAATGATTCTTTAGATATCGAATCCCGCGCCGTCGCCGGAAAGAATGGACATGCTCAAAAGGTCGAGAGCTGGGGATTGGTGTTGAATCTTGCGTTTCAGAGTATTGGAATAGTGTACGGAGACATCGGGACGTCACCGTTGTATGTATTTTCGAGTACATTCATCGACGGCATCAATCATAACGACGATATCTTGGGCGTTCTCTCTTTGATATTCTATACTCTTACTTTAATCCCTCTCGTTAAATATGTCTTCTTCGTCTTGCAAGCTAATGACAATGGCGAAGGAGGGACGTTTGCGTTATACTCACTGCTATGCCGATACGCGAAAATTGGTTTGATTCCAAGCGAGCAAGTAGAAGATAAAGAGGTTTCAAATTTCCAGATAGAGTTGCCAAGCAACCGCCTGAGAATGGCGTCTTCTCTAAAGACGAAACTGGAAAACAGTCGCTTCGCTAAGCTTTTCTTGCTCTTCGCCACCATGCTCGGTACTTCCATGGTCATCGGCGACGGCGTTCTCACTCCTTCCATCTCAGTTTTGTCGGCTGTGGGAGGAATCAAGAGTGCTACACCGTCTATGACACAAGATAAAATTGTTTGGATATCAGCAGCAATCTTGGTTTGCTTATTCATGGTGCAAAGATTTGGAACACATAAAGTTGGATACAGCTTTGCCCCAATTATATGCATATGGTTTGCACTTATTGGTGGCATTGGGTTATACAATTTTGTGAAATTTGATCCTTCTGTTATCAAGGCTTTAAATCCAAAATATATCATTGACTACTTCAGAAGGAACAAAAAGGGAGCTTGGGTTTCCCTTGGTGGTACAGTTCTTGCCATTACAGGAACCGAAGCTCTATTCGCCGACGTTGGACACTTCACAGTGAAGTCCATAAGGATAAGCATGTGCTGCGTTGCCTACCCAGCTCTCGTTTCAGCATATGTTGGACAAGCTTCCTTCCTTCGCGCTCACAATGATCTTGTCTCCGACACCTTCTTCAGCTCTGTTCCAGGTCCTCTGTATTGGCCGATGTTCGTGGTGGCGGTATTGGCGGCCATCGTTGCTAGTCAAGCCATGATCTCGGGGACTTTCTCTATCATTCAACAATCCCTCTCTTATGGCTGCTTCCCTAGGGTGAAAGTTGTCCACACTTCTTCGAAATATGAAGGCCAAGTTTACATTCCTGAAGTCAATTATTTTCTTATGTTGGCTTGCCTTGGAGTCACTTTGGGTTTCAAAGACACCACGAGGATCGGCAATGCCTACGGCATAGCAGTGGTGTTTGTGATGACACTCACTTCAAGCTTCCTAGTTCTCATCATGATCATGATATGGAAGTCTCACATTCTTGTCATAATCTCCTACGTTCTCACCATTGGCCTATTGGAGCTTCTCTATCTAAGTTCAGTCCTCTACAAGTTCGATCAAGGCGGATATCTTCCCCTAGCTTTTGCAGCGTTTTTGATGTTTGTAATGTTCATTTGGAACGACGTCCATAGAAGAAAATACTACTACGAGCTCGAGCACAAAATCTCCCCTCAAAAGCTCAAGGACATTGCATCTGACACCAGCCTCAACCGGGTCCCTGGCCTTGCCTTGTTTTACTCTGAGCTCGTTCAAGGCATCCCCCCAATCTTCAGCCATTACCTTGCACACGTGCCCACTCTCCAAAGGGTCCTTGTCTTTGTGTCCTTCAAGTCTCTCCCCATAAGCAAAGTTCCCTTGGAAGAGCGATTCTTATTCCGACGAGTCGAGCCGAATGAACTCAACGTGTTTCGATGCGTCATTCGGTACGGATATAGAGACGTCATCCACGAGCAAGAGTCGTTCGAGAGGGTGTTGGTGGAGAGATTGAAGGAGTACATAGCTGATGATGAGTTGTGGTCGCCTCAGAATGAAGAGACCGAAAATGAGTTGGAGAAGAGGTGGAGAGTTGAAGGGGAGATAGAGGTGGTGGATAAAGCATGGAGAGATGGAGTTGTACACTTGATTGGCCAAAATGAGGTGGTGGCTAGCAAAGGGTCTGGTTTGGCGAAGAGGGTTTTGATTGATTATGCTTACAATATATTGAGAAGAAACTTGAGACAAAGTGAAGAGGTTTTTTACATCCCTCGCAAGCGTATGCTTAAAGTGGGCATGACTTATGAGCTTTAA 2271 45.27 MAIEEMETENGNNLQESSDSETSREVGGKRVSHESLRRNDSLDIESRAVAGKNGHAQKVESWGLVLNLAFQSIGIVYGDIGTSPLYVFSSTFIDGINHNDDILGVLSLIFYTLTLIPLVKYVFFVLQANDNGEGGTFALYSLLCRYAKIGLIPSEQVEDKEVSNFQIELPSNRLRMASSLKTKLENSRFAKLFLLFATMLGTSMVIGDGVLTPSISVLSAVGGIKSATPSMTQDKIVWISAAILVCLFMVQRFGTHKVGYSFAPIICIWFALIGGIGLYNFVKFDPSVIKALNPKYIIDYFRRNKKGAWVSLGGTVLAITGTEALFADVGHFTVKSIRISMCCVAYPALVSAYVGQASFLRAHNDLVSDTFFSSVPGPLYWPMFVVAVLAAIVASQAMISGTFSIIQQSLSYGCFPRVKVVHTSSKYEGQVYIPEVNYFLMLACLGVTLGFKDTTRIGNAYGIAVVFVMTLTSSFLVLIMIMIWKSHILVIISYVLTIGLLELLYLSSVLYKFDQGGYLPLAFAAFLMFVMFIWNDVHRRKYYYELEHKISPQKLKDIASDTSLNRVPGLALFYSELVQGIPPIFSHYLAHVPTLQRVLVFVSFKSLPISKVPLEERFLFRRVEPNELNVFRCVIRYGYRDVIHEQESFERVLVERLKEYIADDELWSPQNEETENELEKRWRVEGEIEVVDKAWRDGVVHLIGQNEVVASKGSGLAKRVLIDYAYNILRRNLRQSEEVFYIPRKRMLKVGMTYEL 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6417672 6422342 - evm.model.ptg000015l.998 HCH4g0998 543242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0998 756 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 44 755 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
HCH4g0998 756 NCBIfam potassium uptake protein 68 755 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
HCH4g0998 756 MobiDBLite consensus disorder prediction 22 36 - -
HCH4g0998 756 MobiDBLite consensus disorder prediction 1 36 - -
HCH4g0998 756 Pfam K+ potassium transporter integral membrane domain 68 554 IPR053951 -
HCH4g0998 756 Pfam K+ potassium transporter C-terminal domain 568 756 IPR053952 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0998 HCH-Chr4:6417672 HCH5g1145 HCH-Chr5:38196589 3.50E-237 dispersed
HCH4g0998 HCH-Chr4:6417672 HCH4g0999 HCH-Chr4:6427655 3.50E-306 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0998 K03549 - csv:101213493 1242.25