Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1000 ATGAAAGGAACTTTGACTACACACTTAAAACTCCACCAATTAGGACAAGTCTCCGTCTTCCCTCTCCACCTCCACCGCTCATCTTCCGCTGCCGCTTCTGAACCTCCGGTTACGGCTTCCGATGCTCTTCCGTCTTCCTCGTGTCGTGCTGTTTCTGATCTCGATCCTAATTTTGAGGATAAGGATTTCATTCTTAGTCAGGATTTCTTCTGCACTCCGGACTATATCACTCCAGATAATCAAAATCTGTTGAATAGTTTAGATTGTAACAAGGAAAACATTCCTTGCCCAAAATCGCCGGAGAAAATTAATACTGTTAATACTAAGAGAAAACGATATGATAGTGTTTTGGTAAATCCTCTGAGCCCGAGCTTGTCTAGTCATCAACCAGTAGTGGAGTTGGGTAATGACAGTTTTGGGACGGATGAAGTGACTGTGGAGAATGAGATGAGTGGAATGCAGAAGAAACAAAACTATGTGTCTCAATCTGCAGTTGCTCTACGCTGTCGAGTTATGCCCCCTCCTTGCATGAAGAATCCATACTTGAAAGATGCTTCAGATGTAGGCGTTGACCCATTTGGTAATCAAAGAACGAAATGTGCAGGTTTCTTTCCTTTCCTGTTTGGTGGAGATGGCCTTTCACGTTATCACACTGATTTCCATGAGATAAAGCAAATAGGGATTGGGAATTTTAGTCGCGTCTTCAAAGTATTGAAGAGAATTGATGGTTGCTTGTATGCTGTCAAACAAAGCACAAGACAATTGCATCAAGATATAGAAAGGAGGAGAGCTTTGATGGAAGTTCAAGCTTTGGCAGCTTTGGGATCACATGAAAACATTGTCGGATACTACTCTTCCTGGTTTGAAAACGAGCAACTTTACATTCAAATGGAACTCTGTGACTGCAGTATGTCCATGAACGAGTATTCTCATCAATTCACGGAGGCAGATGCACTGATAACCTTGCATCATATTGCAAAAGCATTGCTGTTTGTGCACGAGAAGGGGATAGCTCATTTAGATGTGAAGCCTGACAATATTTATGTCAAAGATGGTGTGTATAGACTTGGTGATTTTGGATGTGCTACTCTTCTTGATAAAAGCCTGCCAATTGAGGAGGGTGATGCACGCTATATGCCTCAAGAAATTCTCAATGAGAGATATGATTATCTTGACAAAGTTGATATATTCTCTTTGGGAGCTACTATTTATGAGATTGTGAGAGGATCAACATTGCCAGAAGCACATTTCATGAATCTTAAGGAGGGAAAATTGCCACTCCTTCCTGGCCATTCATTGCAATTTCAAAACTTAATCAAGGCCATGGTGGATCCGGACCCAACGCGACGACCTTCATCCCGAGAAATTCTTGAGAATCCCATATTTGATAAGGTCAGAAGTCATCCAAAACCCTAG 1416 41.81 MKGTLTTHLKLHQLGQVSVFPLHLHRSSSAAASEPPVTASDALPSSSCRAVSDLDPNFEDKDFILSQDFFCTPDYITPDNQNLLNSLDCNKENIPCPKSPEKINTVNTKRKRYDSVLVNPLSPSLSSHQPVVELGNDSFGTDEVTVENEMSGMQKKQNYVSQSAVALRCRVMPPPCMKNPYLKDASDVGVDPFGNQRTKCAGFFPFLFGGDGLSRYHTDFHEIKQIGIGNFSRVFKVLKRIDGCLYAVKQSTRQLHQDIERRRALMEVQALAALGSHENIVGYYSSWFENEQLYIQMELCDCSMSMNEYSHQFTEADALITLHHIAKALLFVHEKGIAHLDVKPDNIYVKDGVYRLGDFGCATLLDKSLPIEEGDARYMPQEILNERYDYLDKVDIFSLGATIYEIVRGSTLPEAHFMNLKEGKLPLLPGHSLQFQNLIKAMVDPDPTRRPSSREILENPIFDKVRSHPKP 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6437507 6445328 - evm.model.ptg000015l.1000 HCH4g1000 543244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1000 471 FunFam WEE protein kinase 210 298 - -
HCH4g1000 471 Gene3D Phosphorylase Kinase; domain 1 211 298 - -
HCH4g1000 471 SMART serkin_6 220 462 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1000 471 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 51 458 IPR050339 GO:0004672(PANTHER)|GO:0004713(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
HCH4g1000 471 MobiDBLite consensus disorder prediction 444 471 - -
HCH4g1000 471 SUPERFAMILY Protein kinase-like (PK-like) 213 466 IPR011009 -
HCH4g1000 471 ProSitePatterns Protein kinases ATP-binding region signature. 226 249 IPR017441 GO:0005524(InterPro)
HCH4g1000 471 MobiDBLite consensus disorder prediction 447 471 - -
HCH4g1000 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 337 349 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1000 471 Pfam Protein kinase domain 220 462 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1000 471 ProSiteProfiles Protein kinase domain profile. 220 462 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1000 471 Gene3D Transferase(Phosphotransferase) domain 1 299 467 - -
HCH4g1000 471 FunFam Wee1-like protein kinase 299 466 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1000 HCH-Chr4:6437507 HCH6g0400 HCH-Chr6:7819020 4.20E-15 dispersed
HCH4g1000 HCH-Chr4:6437507 HCH14g0719 HCH-Chr14:35574849 6.90E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81464 PF00069 Pkinase 8.80E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1000 K06632 - csv:101213255 756.518