Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1002 ATGGCGGTTAAAGTGTATGGAGCAGCCATATCAACATGCACATCTCGAGTATTGATTTGCCTCCATGAAAAACAACTAGACTTCGAGCTTCTTCATGTAGATCTTTTCACTTCTCAACACAACCACCCTTCATTTCTTGCCAAGAATCCCTTTGGCCAGATTCCAGCATTTGAAGATGATGATCTCACTCTATTTGAATCAAGAGCAATCACATCGTACATTGCCGAAAAGTACAAAGAAACCGGCAACGATCTTCTGAGACATGAAAACCTCAAAGAAGCAGCCATTGTTAAGGTGTGGTTGGAGGTTGAATCCCAGCATTACAGCCCTGCAATAACTCCAATTATTCACCAATTCTTCACTTCTCATTTGAAAGGCATGCAGCCCGACATGTCGGTCATCGATGAAAACGTGGAAAAACTAAGCAGAGTGTTGGATGTTTATGAGCAAAGGCTGAGCAAAAGCAAGTTCCTTGGTGGAGATTTCTATAGCTTGGCTGATCTTCATCATCTTCCTTATACGTTTTACTTGATGAAAACTCCCTGGGCTTCTCTGCTAAATGATCGGCCCCATGTCAAGGCTTGGTGGGACGACATATCGTCTCGGCCTGCTTTTCTGAAAGTGGCTGAGGGCATGACTTTTGGTGTTGACAAAAAATAA 660 43.03 MAVKVYGAAISTCTSRVLICLHEKQLDFELLHVDLFTSQHNHPSFLAKNPFGQIPAFEDDDLTLFESRAITSYIAEKYKETGNDLLRHENLKEAAIVKVWLEVESQHYSPAITPIIHQFFTSHLKGMQPDMSVIDENVEKLSRVLDVYEQRLSKSKFLGGDFYSLADLHHLPYTFYLMKTPWASLLNDRPHVKAWWDDISSRPAFLKVAEGMTFGVDKK 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6452261 6453297 + evm.model.ptg000015l.1002 HCH4g1002 543246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1002 219 Pfam Glutathione S-transferase, C-terminal domain 114 203 IPR004046 -
HCH4g1002 219 SUPERFAMILY GST C-terminal domain-like 73 211 IPR036282 -
HCH4g1002 219 SUPERFAMILY Thioredoxin-like 2 82 IPR036249 -
HCH4g1002 219 Gene3D - 87 209 - -
HCH4g1002 219 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 211 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
HCH4g1002 219 SFLD Glutathione Transferase (cytosolic) 1 212 IPR040079 -
HCH4g1002 219 SFLD Main.5: Phi-like 1 212 - -
HCH4g1002 219 FunFam Glutathione S-transferase F2 88 209 - -
HCH4g1002 219 CDD GST_N_Phi 2 77 - -
HCH4g1002 219 Pfam Glutathione S-transferase, N-terminal domain 1 76 IPR004045 -
HCH4g1002 219 FunFam Glutathione S-transferase F2 2 86 - -
HCH4g1002 219 Gene3D Glutaredoxin 1 86 - -
HCH4g1002 219 CDD GST_C_Phi 92 209 IPR034347 -
HCH4g1002 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
HCH4g1002 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 219 IPR010987 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1002 HCH-Chr4:6452261 HCH4g1005 HCH-Chr4:6464769 1.60E-49 dispersed
HCH4g1002 HCH-Chr4:6452261 HCH4g1003 HCH-Chr4:6456958 1.80E-53 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1002 K00799 - vvi:100247639 325.479