Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1003 ATGGCAAGCATTAAAGTCCATGGAAGCGCTCTTTCCACAGCCGCTGGTAGAGTTCTTGCTTGTCTTTATGAGAAAGAGCTTGATTACGAACTTGTTCTTGTGGATATGAAAACCGGTGAACATAAGAAGGAGCCTTTCCTTTCCATTAACCCGTTTGGTCAAGTTCCAGGGTTTGTGGATGGAGATCTAACCATTTTCGAATCCAGAGCCATTACTGACTATATCGCCCGCGCCTATGCCAACAAAGGAACCCAATTGATATCTGAAGACCCAAAGAAAATGGCAACCATATCACAATGGATTGAAGTGGAAGGCCACCACTATGATCCGCCGGCAGTGCAACTGTCTTTTGAGTATCTGGTGAAGCCAATGTTTGGGCTCGGTGAGACGGATCCGGCGGTGGTGGAAGAAAACGAAGCCAAGCTGAGCAAAGTTCTGGACATCTATGAGACACAGCTTGGTAAATCAAAGTACTTGGCAGGGAACGATTTCACGTTGGCAGATCTGCACCATCTCCCAAACATAAGCTACTTATTCATGACACCGTCGAAGAAACTGTTCGAGTCACGGCCTCATGTTAACGCTTGGGTTGCTGATATCATGGCGCGGCCTGCATGGGCCAAGGTCGTCGACCTGCGCAAACAAAGCTAA 651 47.62 MASIKVHGSALSTAAGRVLACLYEKELDYELVLVDMKTGEHKKEPFLSINPFGQVPGFVDGDLTIFESRAITDYIARAYANKGTQLISEDPKKMATISQWIEVEGHHYDPPAVQLSFEYLVKPMFGLGETDPAVVEENEAKLSKVLDIYETQLGKSKYLAGNDFTLADLHHLPNISYLFMTPSKKLFESRPHVNAWVADIMARPAWAKVVDLRKQS 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6456958 6458079 + evm.model.ptg000015l.1003 HCH4g1003 543247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1003 216 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 216 IPR010987 -
HCH4g1003 216 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
HCH4g1003 216 FunFam Glutathione S-transferase F2 3 87 - -
HCH4g1003 216 SFLD Glutathione Transferase (cytosolic) 1 213 IPR040079 -
HCH4g1003 216 SFLD Main.5: Phi-like 1 213 - -
HCH4g1003 216 Gene3D Glutaredoxin 2 87 - -
HCH4g1003 216 FunFam Glutathione S-transferase F2 88 210 - -
HCH4g1003 216 CDD GST_N_Phi 4 77 - -
HCH4g1003 216 CDD GST_C_Phi 92 210 IPR034347 -
HCH4g1003 216 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 215 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
HCH4g1003 216 SUPERFAMILY GST C-terminal domain-like 83 211 IPR036282 -
HCH4g1003 216 SUPERFAMILY Thioredoxin-like 1 83 IPR036249 -
HCH4g1003 216 Pfam Glutathione S-transferase, C-terminal domain 118 204 IPR004046 -
HCH4g1003 216 Gene3D - 90 214 - -
HCH4g1003 216 Pfam Glutathione S-transferase, N-terminal domain 12 77 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0822 HCH-Chr4:5284872 HCH4g1003 HCH-Chr4:6456958 1.10E-50 dispersed
HCH4g1003 HCH-Chr4:6456958 HCH4g1005 HCH-Chr4:6464769 6.50E-88 dispersed
HCH4g1002 HCH-Chr4:6452261 HCH4g1003 HCH-Chr4:6456958 1.80E-53 tandem
HCH4g1003 HCH-Chr4:6456958 HCH4g1004 HCH-Chr4:6460143 1.80E-85 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1003 K00799 - csv:101212771 355.525