Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1004 ATGGCTACCATTAAAGTTCATGGAATTCCGATTTCGACATATACAAGGAGAGTTCTAGCCTGTCTTTATGAGAAAGAGCTTGAATACGATTTGGTTCTTGTTAAAATGCATGAAGAAGAACATAAGAAAGAGCCGTTCCTTTCCATCAATCCATTTGGTCAAATTCCTGGGTTTCAAGATGGAGATTTGACGCTCTTTGAATCTAGGGCGATCACGAAATACATCTCATGGAATTATAGTGCTCAGGGAACCCAGTTGATATCCCAAGATCCGAAGAAAGCGGCGAGCGTACTAACTTGGGTTGAGGTGGAGAGCAACCACTTTGATCCACCAGCATCAAAACTGGCATGGGAGTTGTGCTTCAAGCCAATGCTTGGGTTTGATGAGACAGATGCTACAGTGGTTGAGAAAAATGAAGCTGAATTGAGTAAAGTTCTTGATATCTATGAGAATAAGCTGGCTCAATCGAAATACTTGGCTGGTGATTCCTTCACTTTGGCAGATCTTCATCACCTCCCTAACTTATCCGTTTTGTTGGGGACACAGTCTAAGGAATTGTTTGAATCACGCCCTCATGTCAACGCCTGGGTGGCCGATATTACAGCAAGGCCGGCATGGGCTAAGGTGCTTGCTCTGAGCAAGTGA 645 43.88 MATIKVHGIPISTYTRRVLACLYEKELEYDLVLVKMHEEEHKKEPFLSINPFGQIPGFQDGDLTLFESRAITKYISWNYSAQGTQLISQDPKKAASVLTWVEVESNHFDPPASKLAWELCFKPMLGFDETDATVVEKNEAELSKVLDIYENKLAQSKYLAGDSFTLADLHHLPNLSVLLGTQSKELFESRPHVNAWVADITARPAWAKVLALSK 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6460143 6461096 + evm.model.ptg000015l.1004 HCH4g1004 543248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1004 214 SFLD Main.5: Phi-like 1 212 - -
HCH4g1004 214 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
HCH4g1004 214 FunFam Glutathione S-transferase F2 88 210 - -
HCH4g1004 214 SUPERFAMILY Thioredoxin-like 1 81 IPR036249 -
HCH4g1004 214 Gene3D - 90 214 - -
HCH4g1004 214 SUPERFAMILY GST C-terminal domain-like 85 209 IPR036282 -
HCH4g1004 214 CDD GST_N_Phi 3 76 - -
HCH4g1004 214 Pfam Glutathione S-transferase, C-terminal domain 110 204 IPR004046 -
HCH4g1004 214 Pfam Glutathione S-transferase, N-terminal domain 3 75 IPR004045 -
HCH4g1004 214 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 213 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
HCH4g1004 214 Gene3D Glutaredoxin 2 87 - -
HCH4g1004 214 FunFam Glutathione S-transferase F2 3 87 - -
HCH4g1004 214 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 214 IPR010987 -
HCH4g1004 214 SFLD Glutathione Transferase (cytosolic) 1 212 IPR040079 -
HCH4g1004 214 CDD GST_C_Phi 92 210 IPR034347 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1003 HCH-Chr4:6456958 HCH4g1004 HCH-Chr4:6460143 1.80E-85 tandem
HCH4g1004 HCH-Chr4:6460143 HCH4g1005 HCH-Chr4:6464769 5.80E-113 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1004 K00799 - csv:101212536 321.242