Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1005 ATGGCTACCATTAAAGTTCATGGAAGTCCGATCTCGACAGCTACAGGGAGAGTTCTGGCTTGTCTTTATGAGAAAGAGCTTGAATATGATTTGGTTCTCGTGAAAATGCATGAAGGCGAGCATAAGAAAGAGCCGTTCCTTTCCATCAATCCATTTGGTCAAGTTCCTGGGTTTCAAGATGGAGATTTGACGCTCTTTGAATCTAGGGCAATCACGAAATACATCTCGTGGAATTATAGTGCTCAGGGAACCCAGTTGATATCCCAAGATCCAAAGAAAGCGGCGATCGTACTAACTTGGGTTGAGGTGGAGAGCAACCATTTCGATCCACCAGCATCAAAACTGGCATGGGAGTTGAGCTTCAAGCCAATGCTTGGGTTTGCTGAGACAGATGCTGCAGTGGTTGAGAAAAATGAAGCTGAATTGGGTAAAGTTCTTGATATCTATGAGAATAAGCTGGCTCGATCGAAATACTTGGCTGGTGATTCCTTCACTTTGGCAGATCTTCATCACCTCCCTAACTTATCCGTTTTGTTGGGGACACAGTCTAAGGAATTGTTTGAATCACGCCCTCATGTCAACGCCTGGGTGGCCGATATTACAGCAAGGCCGGCATGGGTTAAGGTGCTTGTTCTGCAGGAGTGA 645 45.58 MATIKVHGSPISTATGRVLACLYEKELEYDLVLVKMHEGEHKKEPFLSINPFGQVPGFQDGDLTLFESRAITKYISWNYSAQGTQLISQDPKKAAIVLTWVEVESNHFDPPASKLAWELSFKPMLGFAETDAAVVEKNEAELGKVLDIYENKLARSKYLAGDSFTLADLHHLPNLSVLLGTQSKELFESRPHVNAWVADITARPAWVKVLVLQE 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6464769 6466007 + evm.model.ptg000015l.1005 HCH4g1005 543249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1005 214 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 213 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
HCH4g1005 214 SUPERFAMILY Thioredoxin-like 1 81 IPR036249 -
HCH4g1005 214 Pfam Glutathione S-transferase, C-terminal domain 111 204 IPR004046 -
HCH4g1005 214 CDD GST_N_Phi 3 76 - -
HCH4g1005 214 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 214 IPR010987 -
HCH4g1005 214 SUPERFAMILY GST C-terminal domain-like 85 209 IPR036282 -
HCH4g1005 214 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
HCH4g1005 214 SFLD Main.5: Phi-like 1 210 - -
HCH4g1005 214 Gene3D - 90 213 - -
HCH4g1005 214 CDD GST_C_Phi 92 210 IPR034347 -
HCH4g1005 214 FunFam Glutathione S-transferase F2 88 210 - -
HCH4g1005 214 Pfam Glutathione S-transferase, N-terminal domain 10 75 IPR004045 -
HCH4g1005 214 Gene3D Glutaredoxin 2 87 - -
HCH4g1005 214 FunFam Glutathione S-transferase F2 3 87 - -
HCH4g1005 214 SFLD Main (cytGST) 1 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1002 HCH-Chr4:6452261 HCH4g1005 HCH-Chr4:6464769 1.60E-49 dispersed
HCH4g1003 HCH-Chr4:6456958 HCH4g1005 HCH-Chr4:6464769 6.50E-88 dispersed
HCH4g1004 HCH-Chr4:6460143 HCH4g1005 HCH-Chr4:6464769 5.80E-113 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1005 K00799 - csv:101212291 320.857