Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g1042 | ATGCATAACCTCGAAAGAAAAACTCAAACCTTACTTTTTTTCATACCCATTTCCACCATTATCATTACCTTCTTCTTCTACTTCCCCTTCTCGTCCATTCCCAATTCACCAAATTCCCCACCAATCCATATCCACCGGAAAGCCGCTCTCTCCTCCTGCCACGACACACTTTACCCTAAACTCTGCTACTCAAAACTCTCTTCCTTCCCAAACTTAGCCTCCCTCTCGCCGGAGAAACTGGCCAGCAACGCCGTCAACTTCACAATGGCTGAAGTTCAAGGAGCTTTCGAAAACTGCACTAACCTCAAGAAAGCACTTTACGCCTCACTCAAACCCACCGACAAACTCGCCCTCGACGACTGCCTTGAGCTTCTCGACGGCAGCATCGCCGACCTCAAAGCTTCTATCTCCGATCTAGCGCCATCGCATTCTCCCTCCAAACACTCCTCCGACTTGCTGACGTTACTCAGCGCCGCCATGACTAATCATTACACGTGCCTTGACGGATTTTATCAGAGTTCTGGGTCGGTAAGGAGCCGGGTCGAACAGTACTTGAATAAGATTGGGCAGCATTTGAGTATTGATTTGGTGATGTTGAAGAAGATTCCCGGAGTTAATAAAACTAGGCCGCCAACGCCGGATGATGTGTTCCCGGAGTATGGGGCGGTGGAGCATGGGTTCCCGACGTGGGTTTCGCCGAAGGATCGGAAGTTGCTGCAGGCGCCGGTGAACCAGAGTAAGTTTGATTTGGTTGTGGCGAAAGATGGATCCGGTAATTTCACGACCATTGTGGAGGCGGTCGCCGCTGCTCCGAATTCGAGTAATACCAGGTTTGTAATCTACATAAAAGCTGGGGCGTATTTTGAGAACGTGGAAATAGAAAGGAAGAAGACCAACTTGATGTTCGTCGGCGACGGAATCGGAAAGACGCTTATAAAAGGTAATCGGAACGTCGTCGATGGGTGGACAACTTTCCGATCAGCAACTGTCGCTGCTGTGGGGAGTGGATTCATAGCCAAAGGCATAACCTTCGAAAACTTCGCCGGACCGAGCAAACACCAAGCCGTGGCCTTAAGAAGCAACTCAGACTTCTCAGCATTTTACCAATGCAGCTTCGTCGCCTACCAAGACACCCTCTACACTCACTCCCTCCGTCAATTTTACCGCGATTGCGATATCTACGGCACCATCGATTTCATATTCGGCAACGCGGCCGTCGTCTTCCAAAACTGCAGCCTCTACGCCCGTAAACCCAACTCAAACCAACGCAACATCTTCACGGCCCAAGGCCGAGAAGACCCGAATCAAAATACCGGAATCTCTATCTTGAATTCCAAAGTGGAAGCGGCTTCCGATTTGATCCCAGAGATTTCGTCATTCAAAACGTACCTTGGCCGGCCATGGAAGCAGTATTCCAGGACGGTGTTTCTTCGATCATTCATCGGACAGTTGGTGGATCCGGCGGGGTGGTTAGAATGGAATGGGACGTTTGCATTGGATACTTTGTATTATGGGGAGTATTTGAATCGTGGGCCGGGTTCGAATACGAGTAGTAGAGTGCGTTGGCCGGGTTATCGGATTATTAATAGCTCGTCGGAGGCGAGTCAGTTTACGGTTGCGCCGTTTATACAAGGGAGTGAGTGGCTGAATTCCACCGGGATTCCTTTCTTCACCGGCTTGGCTTGA | 1686 | 50.06 | MHNLERKTQTLLFFIPISTIIITFFFYFPFSSIPNSPNSPPIHIHRKAALSSCHDTLYPKLCYSKLSSFPNLASLSPEKLASNAVNFTMAEVQGAFENCTNLKKALYASLKPTDKLALDDCLELLDGSIADLKASISDLAPSHSPSKHSSDLLTLLSAAMTNHYTCLDGFYQSSGSVRSRVEQYLNKIGQHLSIDLVMLKKIPGVNKTRPPTPDDVFPEYGAVEHGFPTWVSPKDRKLLQAPVNQSKFDLVVAKDGSGNFTTIVEAVAAAPNSSNTRFVIYIKAGAYFENVEIERKKTNLMFVGDGIGKTLIKGNRNVVDGWTTFRSATVAAVGSGFIAKGITFENFAGPSKHQAVALRSNSDFSAFYQCSFVAYQDTLYTHSLRQFYRDCDIYGTIDFIFGNAAVVFQNCSLYARKPNSNQRNIFTAQGREDPNQNTGISILNSKVEAASDLIPEISSFKTYLGRPWKQYSRTVFLRSFIGQLVDPAGWLEWNGTFALDTLYYGEYLNRGPGSNTSSRVRWPGYRIINSSSEASQFTVAPFIQGSEWLNSTGIPFFTGLA | 561 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 6698670 | 6702008 | - | evm.model.ptg000015l.1042 | HCH4g1042 | 543286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g1042 | 561 | FunFam | Pectinesterase | 243 | 560 | - | - | |
| HCH4g1042 | 561 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 51 | 203 | IPR035513 | - | |
| HCH4g1042 | 561 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 50 | 204 | IPR035513 | - | |
| HCH4g1042 | 561 | SMART | PMEI_2 | 44 | 198 | IPR006501 | GO:0004857(InterPro) | |
| HCH4g1042 | 561 | NCBIfam | pectinesterase inhibitor domain | 21 | 201 | IPR006501 | GO:0004857(InterPro) | |
| HCH4g1042 | 561 | ProSitePatterns | Pectinesterase signature 2. | 393 | 402 | IPR033131 | - | |
| HCH4g1042 | 561 | Pfam | Pectinesterase | 249 | 545 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| HCH4g1042 | 561 | Gene3D | - | 244 | 560 | IPR012334 | - | |
| HCH4g1042 | 561 | SUPERFAMILY | Pectin lyase-like | 246 | 559 | IPR011050 | - | |
| HCH4g1042 | 561 | CDD | PMEI-like_3 | 51 | 204 | - | - | |
| HCH4g1042 | 561 | PANTHER | PECTINESTERASE | 24 | 551 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| HCH4g1042 | 561 | Pfam | Plant invertase/pectin methylesterase inhibitor | 51 | 196 | IPR006501 | GO:0004857(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g1124 | HCH-Chr11:42991513 | HCH4g1042 | HCH-Chr4:6698670 | 2.70E-124 | dispersed | |
| HCH11g1314 | HCH-Chr11:45155496 | HCH4g1042 | HCH-Chr4:6698670 | 1.50E-131 | dispersed | |
| HCH14g0833 | HCH-Chr14:36237854 | HCH4g1042 | HCH-Chr4:6698670 | 6.80E-126 | dispersed | |
| HCH3g0388 | HCH-Chr3:2537195 | HCH4g1042 | HCH-Chr4:6698670 | 8.80E-85 | dispersed | |
| HCH3g0392 | HCH-Chr3:2549703 | HCH4g1042 | HCH-Chr4:6698670 | 5.20E-82 | dispersed | |
| HCH4g1042 | HCH-Chr4:6698670 | HCH5g0877 | HCH-Chr5:7247690 | 8.20E-135 | dispersed | |
| HCH4g1042 | HCH-Chr4:6698670 | HCH4g1043 | HCH-Chr4:6725578 | 1.20E-117 | tandem | |
| HCH12g0693 | HCH-Chr12:4243764 | HCH4g1042 | HCH-Chr4:6698670 | 1.30E-111 | transposed | |
| HCH2g0130 | HCH-Chr2:8982461 | HCH4g1042 | HCH-Chr4:6698670 | 1.00E-95 | transposed | |
| HCH7g0812 | HCH-Chr7:15733688 | HCH4g1042 | HCH-Chr4:6698670 | 9.70E-06 | transposed | |
| HCH4g1042 | HCH-Chr4:6698670 | HCH6g1710 | HCH-Chr6:49794629 | 1.10E-107 | wgd | |
| HCH4g1042 | HCH-Chr4:6698670 | HCH7g1060 | HCH-Chr7:42694465 | 2.00E-104 | wgd | |
| HCH4g1042 | HCH-Chr4:6698670 | HCH8g0081 | HCH-Chr8:3954616 | 2.10E-122 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH4g1042 | K01051 | - | csv:101205557 | 848.195 |