Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1042 ATGCATAACCTCGAAAGAAAAACTCAAACCTTACTTTTTTTCATACCCATTTCCACCATTATCATTACCTTCTTCTTCTACTTCCCCTTCTCGTCCATTCCCAATTCACCAAATTCCCCACCAATCCATATCCACCGGAAAGCCGCTCTCTCCTCCTGCCACGACACACTTTACCCTAAACTCTGCTACTCAAAACTCTCTTCCTTCCCAAACTTAGCCTCCCTCTCGCCGGAGAAACTGGCCAGCAACGCCGTCAACTTCACAATGGCTGAAGTTCAAGGAGCTTTCGAAAACTGCACTAACCTCAAGAAAGCACTTTACGCCTCACTCAAACCCACCGACAAACTCGCCCTCGACGACTGCCTTGAGCTTCTCGACGGCAGCATCGCCGACCTCAAAGCTTCTATCTCCGATCTAGCGCCATCGCATTCTCCCTCCAAACACTCCTCCGACTTGCTGACGTTACTCAGCGCCGCCATGACTAATCATTACACGTGCCTTGACGGATTTTATCAGAGTTCTGGGTCGGTAAGGAGCCGGGTCGAACAGTACTTGAATAAGATTGGGCAGCATTTGAGTATTGATTTGGTGATGTTGAAGAAGATTCCCGGAGTTAATAAAACTAGGCCGCCAACGCCGGATGATGTGTTCCCGGAGTATGGGGCGGTGGAGCATGGGTTCCCGACGTGGGTTTCGCCGAAGGATCGGAAGTTGCTGCAGGCGCCGGTGAACCAGAGTAAGTTTGATTTGGTTGTGGCGAAAGATGGATCCGGTAATTTCACGACCATTGTGGAGGCGGTCGCCGCTGCTCCGAATTCGAGTAATACCAGGTTTGTAATCTACATAAAAGCTGGGGCGTATTTTGAGAACGTGGAAATAGAAAGGAAGAAGACCAACTTGATGTTCGTCGGCGACGGAATCGGAAAGACGCTTATAAAAGGTAATCGGAACGTCGTCGATGGGTGGACAACTTTCCGATCAGCAACTGTCGCTGCTGTGGGGAGTGGATTCATAGCCAAAGGCATAACCTTCGAAAACTTCGCCGGACCGAGCAAACACCAAGCCGTGGCCTTAAGAAGCAACTCAGACTTCTCAGCATTTTACCAATGCAGCTTCGTCGCCTACCAAGACACCCTCTACACTCACTCCCTCCGTCAATTTTACCGCGATTGCGATATCTACGGCACCATCGATTTCATATTCGGCAACGCGGCCGTCGTCTTCCAAAACTGCAGCCTCTACGCCCGTAAACCCAACTCAAACCAACGCAACATCTTCACGGCCCAAGGCCGAGAAGACCCGAATCAAAATACCGGAATCTCTATCTTGAATTCCAAAGTGGAAGCGGCTTCCGATTTGATCCCAGAGATTTCGTCATTCAAAACGTACCTTGGCCGGCCATGGAAGCAGTATTCCAGGACGGTGTTTCTTCGATCATTCATCGGACAGTTGGTGGATCCGGCGGGGTGGTTAGAATGGAATGGGACGTTTGCATTGGATACTTTGTATTATGGGGAGTATTTGAATCGTGGGCCGGGTTCGAATACGAGTAGTAGAGTGCGTTGGCCGGGTTATCGGATTATTAATAGCTCGTCGGAGGCGAGTCAGTTTACGGTTGCGCCGTTTATACAAGGGAGTGAGTGGCTGAATTCCACCGGGATTCCTTTCTTCACCGGCTTGGCTTGA 1686 50.06 MHNLERKTQTLLFFIPISTIIITFFFYFPFSSIPNSPNSPPIHIHRKAALSSCHDTLYPKLCYSKLSSFPNLASLSPEKLASNAVNFTMAEVQGAFENCTNLKKALYASLKPTDKLALDDCLELLDGSIADLKASISDLAPSHSPSKHSSDLLTLLSAAMTNHYTCLDGFYQSSGSVRSRVEQYLNKIGQHLSIDLVMLKKIPGVNKTRPPTPDDVFPEYGAVEHGFPTWVSPKDRKLLQAPVNQSKFDLVVAKDGSGNFTTIVEAVAAAPNSSNTRFVIYIKAGAYFENVEIERKKTNLMFVGDGIGKTLIKGNRNVVDGWTTFRSATVAAVGSGFIAKGITFENFAGPSKHQAVALRSNSDFSAFYQCSFVAYQDTLYTHSLRQFYRDCDIYGTIDFIFGNAAVVFQNCSLYARKPNSNQRNIFTAQGREDPNQNTGISILNSKVEAASDLIPEISSFKTYLGRPWKQYSRTVFLRSFIGQLVDPAGWLEWNGTFALDTLYYGEYLNRGPGSNTSSRVRWPGYRIINSSSEASQFTVAPFIQGSEWLNSTGIPFFTGLA 561
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 6698670 6702008 - evm.model.ptg000015l.1042 HCH4g1042 543286
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1042 561 FunFam Pectinesterase 243 560 - -
HCH4g1042 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 203 IPR035513 -
HCH4g1042 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 204 IPR035513 -
HCH4g1042 561 SMART PMEI_2 44 198 IPR006501 GO:0004857(InterPro)
HCH4g1042 561 NCBIfam pectinesterase inhibitor domain 21 201 IPR006501 GO:0004857(InterPro)
HCH4g1042 561 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
HCH4g1042 561 Pfam Pectinesterase 249 545 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH4g1042 561 Gene3D - 244 560 IPR012334 -
HCH4g1042 561 SUPERFAMILY Pectin lyase-like 246 559 IPR011050 -
HCH4g1042 561 CDD PMEI-like_3 51 204 - -
HCH4g1042 561 PANTHER PECTINESTERASE 24 551 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH4g1042 561 Pfam Plant invertase/pectin methylesterase inhibitor 51 196 IPR006501 GO:0004857(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1124 HCH-Chr11:42991513 HCH4g1042 HCH-Chr4:6698670 2.70E-124 dispersed
HCH11g1314 HCH-Chr11:45155496 HCH4g1042 HCH-Chr4:6698670 1.50E-131 dispersed
HCH14g0833 HCH-Chr14:36237854 HCH4g1042 HCH-Chr4:6698670 6.80E-126 dispersed
HCH3g0388 HCH-Chr3:2537195 HCH4g1042 HCH-Chr4:6698670 8.80E-85 dispersed
HCH3g0392 HCH-Chr3:2549703 HCH4g1042 HCH-Chr4:6698670 5.20E-82 dispersed
HCH4g1042 HCH-Chr4:6698670 HCH5g0877 HCH-Chr5:7247690 8.20E-135 dispersed
HCH4g1042 HCH-Chr4:6698670 HCH4g1043 HCH-Chr4:6725578 1.20E-117 tandem
HCH12g0693 HCH-Chr12:4243764 HCH4g1042 HCH-Chr4:6698670 1.30E-111 transposed
HCH2g0130 HCH-Chr2:8982461 HCH4g1042 HCH-Chr4:6698670 1.00E-95 transposed
HCH7g0812 HCH-Chr7:15733688 HCH4g1042 HCH-Chr4:6698670 9.70E-06 transposed
HCH4g1042 HCH-Chr4:6698670 HCH6g1710 HCH-Chr6:49794629 1.10E-107 wgd
HCH4g1042 HCH-Chr4:6698670 HCH7g1060 HCH-Chr7:42694465 2.00E-104 wgd
HCH4g1042 HCH-Chr4:6698670 HCH8g0081 HCH-Chr8:3954616 2.10E-122 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1042 K01051 - csv:101205557 848.195