Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1043 ATGGCTTCTTCTCCCTCAACAACCACCGCATTCCACACTCTCCTTCTCTTTTCCATCATCCTCACCACCGCTTCAACAAACCCACCTCCTCCTCCGCCGTCGCCCTCCGGCGGCTCCGTCTGCAACTCCACACCAGACCCCTCTTACTGCAAATCCATCTTACCAAATCAAACCAACAATGTCTACTCCTCCGGCCGCTTCTCCGTCCAGAAATCATTATCATCTTCTCAGAAATTCTTGAGACAAGTGGAGAAGTACCTCCGGTCCCGTTCATCGTTGACGGTGAGCGCCATAAGAGCACTGGAAGATTGCCGGTTTCTGGCCGGACTGAATATCGATTTCTTGACGACGACGTTTAAGACGGTGAATTCGAGTAGCGGGGTTCTCCCGGTGATGAAAGCGGATGATGTTCAGACGTTGTTGAGTGGTATTTTGACGAATCAACAGACGTGTTTGGACGGATTGAAAGCGACGGCGTCCGCTTGGGCTGTTAAAAATGGACTCTCCCTCCCACTTGCCGCTGACACCAAACTCTATAGCATGTCCTTGGCTTTGTTTACTAAAGGTTGGGTTCCAAAGAAGAAGAAAGGAACCACAAAGTGGAAGCCCACCGGAAAACATGGCAGATTCAAAACAAGAGCAATCTACGAGACGGCGAGACGGAGGAAGTTGCTTCAGACAGACGGCGGCGGCGATCAAGTTCAGGTGAAAGAAATCGTGGTTGTTAGTCAAGATGGCAGTGGGAATTTCACAACCATTAATGAAGCAATTTCCGCAGCGCCGAATAACTCTGCTTCCACTGATGGCTATTTCTTGATATTTGTCTCTGCCGGAATTTACGAAGAATATGTCTCGATTGCAAAGAATAAAAGGTACTTGATGATGATCGGAGATGGGATTAATCAGACCATTATTACCGGCAACCGGAGCGTCGTTGATGGGTGGACTACTTTCAATTCTGCTACATTTGCCGTGACAGGACCTGGATTCGTAGCAGTGAACATAACCTTCCAAAACACTGCTGGACCCATTAAACACCAAGCTGTAGCTGTCCGGAGCGGCGCCGACTTATCGACATTCTACATGTGCAGCTTCGAAGGGTACCAAGACACATTATACACTCATTCCCTTAGACAATTCTACAGAGAATGTGACATCTATGGAACGGTGGATTTCATATTTGGAAACGCAGCAGTCGTCTTCCAAAACTGCAACCTCTACCCCCGGCTGCCAATGAGCAATCAATTCAACGCCATAACCGCACAGGGACGAACCGATCCGAACCAAAACACGGGCACATCAATACAAAACTGCAGGATAAAACCAGCAGACGATTTAGCGAATAGCTCCGTAACGATTCAGACGTACTTGGGGCGGCCGTGGAAGGAGTATTCGAGGACGATATATATGCAAACATTCATGGATAGTTTGATAAACCCTGCTGGATGGAGAGCTTGGGATGGAGAATTTGCATTGAATACATCATATTATGCAGAGTATAACAATATGGGGCCGGGATCGGACACTTCTCAGAGAGTAAATTGGCCTGGATTTCATCTGATAAATGATACTGATGCTGGGAATTTCACTGCATCTAACTTTGTTTTGGCTGATGATTGGCTGCCGCAGACTGGTGTGCCCTACGCCAGTGGCTTAACAGAGTAG 1665 47.81 MASSPSTTTAFHTLLLFSIILTTASTNPPPPPPSPSGGSVCNSTPDPSYCKSILPNQTNNVYSSGRFSVQKSLSSSQKFLRQVEKYLRSRSSLTVSAIRALEDCRFLAGLNIDFLTTTFKTVNSSSGVLPVMKADDVQTLLSGILTNQQTCLDGLKATASAWAVKNGLSLPLAADTKLYSMSLALFTKGWVPKKKKGTTKWKPTGKHGRFKTRAIYETARRRKLLQTDGGGDQVQVKEIVVVSQDGSGNFTTINEAISAAPNNSASTDGYFLIFVSAGIYEEYVSIAKNKRYLMMIGDGINQTIITGNRSVVDGWTTFNSATFAVTGPGFVAVNITFQNTAGPIKHQAVAVRSGADLSTFYMCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPMSNQFNAITAQGRTDPNQNTGTSIQNCRIKPADDLANSSVTIQTYLGRPWKEYSRTIYMQTFMDSLINPAGWRAWDGEFALNTSYYAEYNNMGPGSDTSQRVNWPGFHLINDTDAGNFTASNFVLADDWLPQTGVPYASGLTE 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6725578 6728423 + evm.model.ptg000015l.1043 HCH4g1043 543287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1043 554 Pfam Pectinesterase 240 536 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH4g1043 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 188 IPR035513 -
HCH4g1043 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 188 IPR035513 -
HCH4g1043 554 ProSitePatterns Pectinesterase signature 2. 386 395 IPR033131 -
HCH4g1043 554 FunFam Pectinesterase 233 552 - -
HCH4g1043 554 Gene3D - 233 552 IPR012334 -
HCH4g1043 554 Pfam Plant invertase/pectin methylesterase inhibitor 39 185 IPR006501 GO:0004857(InterPro)
HCH4g1043 554 PANTHER PECTINESTERASE 12 543 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH4g1043 554 FunFam Pectinesterase 38 188 - -
HCH4g1043 554 SUPERFAMILY Pectin lyase-like 236 551 IPR011050 -
HCH4g1043 554 CDD PMEI-like_3 40 190 - -
HCH4g1043 554 SMART PMEI_2 32 185 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0693 HCH-Chr12:4243764 HCH4g1043 HCH-Chr4:6725578 1.50E-189 dispersed
HCH2g0130 HCH-Chr2:8982461 HCH4g1043 HCH-Chr4:6725578 1.50E-163 dispersed
HCH4g1043 HCH-Chr4:6725578 HCH5g0736 HCH-Chr5:5353497 3.30E-112 dispersed
HCH4g1042 HCH-Chr4:6698670 HCH4g1043 HCH-Chr4:6725578 1.20E-117 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1043 K01051 - csv:101205321 867.07