Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1046 ATGGCTATCGCCGGTACTCATGCCCCTACCTCTAAGGGTCTTCTCTGTAATGCTGGAGCTGGTGCTGCTGCTGGAGTTCTTGCTGCTACATTTGTGTGTCCTTTAGATGTTATCAAGACTAGGTTTCAGGTCCATGGACTGCCAAACATTGGTAAAGGGAGCCTTATAATTGGTAGTCTGGAACAAATAGTCCATAAGGAGGGGCTACGTGGAATGTACCGAGGGCTTGCACCTACTGTGCTTGCATTACTTCCTAACTGGGCTGTTTATTTCACAATCTATGAGCAGCTTAAAAGCTTTCTTTCCTCTGATGATGAAAATCATCAGCTTTCTGTTGGTGCTAATATGATGGCTGCTTCTGGTGCTGGAGCTGCTACAACTATTGCAACTAATCCTCTTTGGGTAGTTAAGACAAGACTTCAAACACAGGGAATGAAATCAGGTGTGCTACCTTATAGAAATACAGCTAATGCCTTGAGGAGAATAGCCTATGAGGAAGGCATCCGTGGGTTGTACAGTGGTCTTGTGCCTGCTTTGGCTGGTATTAGTCACGTTGCCATCCAGTTTCCAACGTATGAGAAAATAAAAGGTTACCTGGCTAGAAGAAGTAACACGACAATGGATAAACTTGGTGCACGTGATGTTGCAGTTGCCTCATCTGTCTCCAAAATATTTGCTTCCACATTGACCTATCCACATGAGGTTGTACGTTCAAGGCTCCAAGAACAAGGGCATCACTCCGAGAAGCGGTACTCTGGTGTGACTGATTGCGTAAAGAAAGTATTTCAGCAAGACGGTCTCGCTGGTTTTTACCGCGGGTGTGCAACTAACCTTATTAGGACCACTCCTGCAGCTGTTATAACATTTACCAGCTTTGAAATGATTCACCGTTTTCTTGTCAACTTATTTCCTCCTGATCCACACCATCACACATTGTGA 939 44.73 MAIAGTHAPTSKGLLCNAGAGAAAGVLAATFVCPLDVIKTRFQVHGLPNIGKGSLIIGSLEQIVHKEGLRGMYRGLAPTVLALLPNWAVYFTIYEQLKSFLSSDDENHQLSVGANMMAASGAGAATTIATNPLWVVKTRLQTQGMKSGVLPYRNTANALRRIAYEEGIRGLYSGLVPALAGISHVAIQFPTYEKIKGYLARRSNTTMDKLGARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGVTDCVKKVFQQDGLAGFYRGCATNLIRTTPAAVITFTSFEMIHRFLVNLFPPDPHHHTL 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6743648 6748145 - evm.model.ptg000015l.1046 HCH4g1046 543290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1046 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 298 IPR018108 -
HCH4g1046 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 12 100 IPR018108 -
HCH4g1046 312 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 12 302 IPR044712 GO:0006862(InterPro)|GO:0022857(PANTHER)|GO:0035352(PANTHER)|GO:0051724(PANTHER)|GO:0055085(PANTHER)|GO:0055085(InterPro)
HCH4g1046 312 Gene3D Mitochondrial carrier domain 4 104 IPR023395 -
HCH4g1046 312 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 3 107 - -
HCH4g1046 312 Pfam Mitochondrial carrier protein 109 201 IPR018108 -
HCH4g1046 312 Pfam Mitochondrial carrier protein 15 103 IPR018108 -
HCH4g1046 312 Pfam Mitochondrial carrier protein 216 301 IPR018108 -
HCH4g1046 312 SUPERFAMILY Mitochondrial carrier 14 294 IPR023395 -
HCH4g1046 312 ProSiteProfiles Solute carrier (Solcar) repeat profile. 110 198 IPR018108 -
HCH4g1046 312 FunFam NAD+ transporter 108 303 - -
HCH4g1046 312 Gene3D Mitochondrial carrier domain 105 302 IPR023395 -
HCH4g1046 312 PRINTS Mitochondrial carrier protein signature 125 143 IPR002067 GO:0055085(InterPro)
HCH4g1046 312 PRINTS Mitochondrial carrier protein signature 30 44 IPR002067 GO:0055085(InterPro)
HCH4g1046 312 PRINTS Mitochondrial carrier protein signature 75 95 IPR002067 GO:0055085(InterPro)
HCH4g1046 312 PRINTS Mitochondrial carrier protein signature 219 241 IPR002067 GO:0055085(InterPro)
HCH4g1046 312 PRINTS Mitochondrial carrier protein signature 17 30 IPR002067 GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1285 HCH-Chr10:45267068 HCH4g1046 HCH-Chr4:6743648 8.60E-114 dispersed
HCH14g0612 HCH-Chr14:34860241 HCH4g1046 HCH-Chr4:6743648 6.40E-49 dispersed
HCH4g1046 HCH-Chr4:6743648 HCH6g1684 HCH-Chr6:49631884 5.60E-24 dispersed
HCH4g1046 HCH-Chr4:6743648 HCH9g0717 HCH-Chr9:4777329 2.30E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1046 K15115 - csv:101204681 539.265