Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH4g1049 | ATGGCGACGAGGAATCGAACCGCGCAATACAAAAAGCACAGAGACGCCGTGAAAAGCGTCCGCGCGCCATTATCTTCCTCAGCAGCTAGTTCGAGCGGTCCGGTTATTGAAATGGTGAATTCTTCTTTTCTTCGTTCCAATCACTCTTCTTATGCCCCTCTTAGCACTGAAGATCCTGGTCCTTCATCAAGTAGTGATGTATTTATGATAGGTCTACCTCCAGATTGGGTCGATGATTCTGAAGAAATTTCTGTTAATATTCAGCGCATTCACAGTAAAATGGCCGAGTTATTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCTGATGGAAAAGATGATGAACATACGATTGAGACTCTTACTCAGGAGATTACAAACCTTTTGAAAACCTCTGAGAAGAGATTGAAGAAAATTTCTACCAGTGGGCCCTCTGAGGATTCTAACATTAGAAAAAACGTTCAGCGTTCTCTTGCTACAGAGCTCCAGAACCTTTCCATGGATCTTCGTAGAAGACAGTCACTTTATCTGAAACGGCTGCAGCAACAAAAAGAGGGACGTGATGGAATTGATTTGGAGATGAATTTGAATGGAAACAGAACTCTACTGGAGGATGATGGATATGGTGATTTTGGAATCAATGACAACGAAATGATGAAATTAGGAATGGATGAGCAGCTCATGGAGGGAAGGGACAAAGAGATCAGACAGGTTGTGAAATCAGTGAATGAGCTTGCACAAATTATGAAGGATCTTTCAGTTCTTGTGATAGACCAGGGTACTATTGTTGATAGGATTGACCACAATATTCAGAATGTTGCAACATCAGTTGAGGAGGGCTTTAAACAGCTTCAGAAGGCAGAGAGAACTCAGAAGGATGGAGCCATGGTGAAGTGTGCAACAGTGCTTGTTATTATGTGTTTAACAATGCTGGTTCTCTTGATACTCAAGGCTATAATTATGTGA | 969 | 41.49 | MATRNRTAQYKKHRDAVKSVRAPLSSSAASSSGPVIEMVNSSFLRSNHSSYAPLSTEDPGPSSSSDVFMIGLPPDWVDDSEEISVNIQRIHSKMAELFKAHSKALMPSFADGKDDEHTIETLTQEITNLLKTSEKRLKKISTSGPSEDSNIRKNVQRSLATELQNLSMDLRRRQSLYLKRLQQQKEGRDGIDLEMNLNGNRTLLEDDGYGDFGINDNEMMKLGMDEQLMEGRDKEIRQVVKSVNELAQIMKDLSVLVIDQGTIVDRIDHNIQNVATSVEEGFKQLQKAERTQKDGAMVKCATVLVIMCLTMLVLLILKAIIM | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6757196 | 6760543 | + | evm.model.ptg000015l.1049 | HCH4g1049 | 543293 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH4g1049 | 322 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 226 | 288 | IPR000727 | - | |
HCH4g1049 | 322 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
HCH4g1049 | 322 | Gene3D | - | 73 | 280 | - | - | |
HCH4g1049 | 322 | SMART | tSNARE_6 | 221 | 288 | IPR000727 | - | |
HCH4g1049 | 322 | FunFam | Syntaxin-43 | 73 | 280 | - | - | |
HCH4g1049 | 322 | ProSitePatterns | Syntaxin / epimorphin family signature. | 232 | 271 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
HCH4g1049 | 322 | PANTHER | SYNTAXIN | 83 | 308 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
HCH4g1049 | 322 | CDD | SNARE_syntaxin16 | 232 | 287 | - | - | |
HCH4g1049 | 322 | SMART | SynN_4 | 68 | 182 | IPR006011 | GO:0016020(InterPro) | |
HCH4g1049 | 322 | Pfam | SNARE domain | 262 | 314 | IPR000727 | - | |
HCH4g1049 | 322 | SUPERFAMILY | t-snare proteins | 72 | 281 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0899 | HCH-Chr10:11467217 | HCH4g1049 | HCH-Chr4:6757196 | 7.20E-107 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH4g1049 | K08489 | - | csv:101204192 | 503.827 |