Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1049 ATGGCGACGAGGAATCGAACCGCGCAATACAAAAAGCACAGAGACGCCGTGAAAAGCGTCCGCGCGCCATTATCTTCCTCAGCAGCTAGTTCGAGCGGTCCGGTTATTGAAATGGTGAATTCTTCTTTTCTTCGTTCCAATCACTCTTCTTATGCCCCTCTTAGCACTGAAGATCCTGGTCCTTCATCAAGTAGTGATGTATTTATGATAGGTCTACCTCCAGATTGGGTCGATGATTCTGAAGAAATTTCTGTTAATATTCAGCGCATTCACAGTAAAATGGCCGAGTTATTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCTGATGGAAAAGATGATGAACATACGATTGAGACTCTTACTCAGGAGATTACAAACCTTTTGAAAACCTCTGAGAAGAGATTGAAGAAAATTTCTACCAGTGGGCCCTCTGAGGATTCTAACATTAGAAAAAACGTTCAGCGTTCTCTTGCTACAGAGCTCCAGAACCTTTCCATGGATCTTCGTAGAAGACAGTCACTTTATCTGAAACGGCTGCAGCAACAAAAAGAGGGACGTGATGGAATTGATTTGGAGATGAATTTGAATGGAAACAGAACTCTACTGGAGGATGATGGATATGGTGATTTTGGAATCAATGACAACGAAATGATGAAATTAGGAATGGATGAGCAGCTCATGGAGGGAAGGGACAAAGAGATCAGACAGGTTGTGAAATCAGTGAATGAGCTTGCACAAATTATGAAGGATCTTTCAGTTCTTGTGATAGACCAGGGTACTATTGTTGATAGGATTGACCACAATATTCAGAATGTTGCAACATCAGTTGAGGAGGGCTTTAAACAGCTTCAGAAGGCAGAGAGAACTCAGAAGGATGGAGCCATGGTGAAGTGTGCAACAGTGCTTGTTATTATGTGTTTAACAATGCTGGTTCTCTTGATACTCAAGGCTATAATTATGTGA 969 41.49 MATRNRTAQYKKHRDAVKSVRAPLSSSAASSSGPVIEMVNSSFLRSNHSSYAPLSTEDPGPSSSSDVFMIGLPPDWVDDSEEISVNIQRIHSKMAELFKAHSKALMPSFADGKDDEHTIETLTQEITNLLKTSEKRLKKISTSGPSEDSNIRKNVQRSLATELQNLSMDLRRRQSLYLKRLQQQKEGRDGIDLEMNLNGNRTLLEDDGYGDFGINDNEMMKLGMDEQLMEGRDKEIRQVVKSVNELAQIMKDLSVLVIDQGTIVDRIDHNIQNVATSVEEGFKQLQKAERTQKDGAMVKCATVLVIMCLTMLVLLILKAIIM 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6757196 6760543 + evm.model.ptg000015l.1049 HCH4g1049 543293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1049 322 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 226 288 IPR000727 -
HCH4g1049 322 MobiDBLite consensus disorder prediction 1 32 - -
HCH4g1049 322 Gene3D - 73 280 - -
HCH4g1049 322 SMART tSNARE_6 221 288 IPR000727 -
HCH4g1049 322 FunFam Syntaxin-43 73 280 - -
HCH4g1049 322 ProSitePatterns Syntaxin / epimorphin family signature. 232 271 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
HCH4g1049 322 PANTHER SYNTAXIN 83 308 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
HCH4g1049 322 CDD SNARE_syntaxin16 232 287 - -
HCH4g1049 322 SMART SynN_4 68 182 IPR006011 GO:0016020(InterPro)
HCH4g1049 322 Pfam SNARE domain 262 314 IPR000727 -
HCH4g1049 322 SUPERFAMILY t-snare proteins 72 281 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0899 HCH-Chr10:11467217 HCH4g1049 HCH-Chr4:6757196 7.20E-107 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1049 K08489 - csv:101204192 503.827