Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1111 ATGGTAGCTGGAGCTGAAGTTGTTGTTGTTTGTTCTAAAAGCCAACCGGTTCTTATTGAACCGATCGATGATTCGATTGATCCCAGTCTTACCCGGGTTCGTTCTGAATCGGTTTCGGCCGAGTTGTTGACTTCTCAATCTGGTATTAAACCTGTGAAGAAAATCCCGGATTCTGCTGTCGATTCGGCTAGCGCCGAGGAATTTCCCTGTCTCCGATCGGGGAGCTTTGCTGATATTGGACCCAGAAGATACATGGAAGATGAACATATAAGGATTGACGATCTATCTTCACAATTGGGATCACTCTTCAAGTTTCCTAAGCCAAGTGCTTTTTATGGGGTATTTGATGGACATGGAGGGCCTGAAGCAGCAGCTTATATACGAAAGAATGTCCTCAGACTTTTTTTCGAAGATGTTAGTTTTCCTCAACTGCCGGACGTTGACGAAGTGTTTTCAGATGAAATTGAAAACTCTTTCCGAAAAGCATTTCTTTTGGCTGATCAAGCTTTGGCAGATGAATCTGACGTGAGTAGTTCTTCTGGAACTACAGCACTAACAGCTCTTATACTTGGAAGGCTTCTAATGGTGGCTAATGTTGGAGATTGCCGAGCAGTTCTCTGTCGTAAAGGAGAGGCAGTGGATATGTCACAAGATCACCGGCCTATTCATTCTTCAGAGAGACAGAGAGTAGAAGAAGTGGGTGGCTACGTAGACGGTGGCTATCTCAATGGAGTTTTATCAGTTTCCAGGGCCCTGGGGGATTGGGACATGAAGTTCCCCCGTGGTTCTCCTTCACCTCTTATTGCAGAACCAGAATGCAAGCAGGTTGTTTTAACAGAGGATGATGAGTTTTTGATCATCGCCTGTGACGGGATTTGGGACGTGATGTCAAGTCAACAAGCAGTTAACGTTGTTCGTCGGGGACTACAGCGGCATGACGACCCTGAGCGGTGTGCTCGAGACCTCGTCATGCAGGCTCTGCGATTAGACACATTTGACAATCTCACTGTTATCGTTATTTGCTTCTCTAGTTTTGATCACGGCGATCCCTCAATACCTCGACAGCAAAAATTGAGATACTGCAGCCTCTCTGCAGAGGCCCTTTGTAGCTTGCAAAGATGGTTGGATAACAGTGGATGCCAATGA 1146 45.99 MVAGAEVVVVCSKSQPVLIEPIDDSIDPSLTRVRSESVSAELLTSQSGIKPVKKIPDSAVDSASAEEFPCLRSGSFADIGPRRYMEDEHIRIDDLSSQLGSLFKFPKPSAFYGVFDGHGGPEAAAYIRKNVLRLFFEDVSFPQLPDVDEVFSDEIENSFRKAFLLADQALADESDVSSSSGTTALTALILGRLLMVANVGDCRAVLCRKGEAVDMSQDHRPIHSSERQRVEEVGGYVDGGYLNGVLSVSRALGDWDMKFPRGSPSPLIAEPECKQVVLTEDDEFLIIACDGIWDVMSSQQAVNVVRRGLQRHDDPERCARDLVMQALRLDTFDNLTVIVICFSSFDHGDPSIPRQQKLRYCSLSAEALCSLQRWLDNSGCQ 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7273095 7275282 + evm.model.ptg000015l.1111 HCH4g1111 543355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1111 381 CDD PP2Cc 72 342 IPR001932 -
HCH4g1111 381 ProSitePatterns PPM-type phosphatase domain signature. 111 119 IPR000222 GO:0043169(InterPro)
HCH4g1111 381 FunFam Probable protein phosphatase 2C 22 58 345 - -
HCH4g1111 381 PANTHER PROTEIN PHOSPHATASE 2C 59 342 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
HCH4g1111 381 SMART PP2C_4 62 340 IPR001932 -
HCH4g1111 381 Pfam Protein phosphatase 2C 82 334 IPR001932 -
HCH4g1111 381 SMART PP2C_SIG_2 87 342 IPR001932 -
HCH4g1111 381 Gene3D - 54 347 IPR036457 -
HCH4g1111 381 ProSiteProfiles PPM-type phosphatase domain profile. 72 342 IPR001932 -
HCH4g1111 381 SUPERFAMILY PP2C-like 67 344 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0048 HCH-Chr12:251006 HCH4g1111 HCH-Chr4:7273095 8.30E-86 dispersed
HCH12g0426 HCH-Chr12:2465023 HCH4g1111 HCH-Chr4:7273095 9.30E-31 dispersed
HCH4g1111 HCH-Chr4:7273095 HCH6g1774 HCH-Chr6:50127475 5.80E-108 dispersed
HCH4g1111 HCH-Chr4:7273095 HCH4g1258 HCH-Chr4:8649790 2.30E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1111 K14803 - csv:101216626 597.43