Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1122 ATGGACGATAGCTGTGCCGTATGCGCCGATACTTTGGAATGGGTTGCCTATGGTTCTTGTGGGCATCGCGATGTCTGTTCCACGTGCGTTGCACGTCTTCGTTTCATTTGTGGCGATCGCCGCTGTTGCATCTGCAAATCGGAATCCTCCGTCGTATTCGTCACTAAGGCATTGGGAGATTATACAAGGATGGTTAACGACTTTACAATCTTTCCTTCTGAACCAAGGGAAGGTCGTCTTGGATCCTATTGGTATCATGAAGACACGGAAACATTTTTTGATGATGTGGACCATTACAAGATGATAAAAGCAATGTGCAGGCTGTCATGCAGTGAGTGTGATAAGATAGGTGAAGATCAACCAAATGATGGTTCAAAGCGTCGAGGAAGGTTCCGGAACATCGAACAGTTGAAGGGTCATTTGTTTCATCGACACAAGTTGTTTATGTGCAGCCTATGTTTAGAAGGAAGGAAGGTTTTTATTTGTGAACAAAAGCTATATAATAGAGCACAATTGAATCAGCATATCAATACTGGTGACTCTGAGGTTGATGGAAGTGAGAGTGAGAGAGGTGGTTTCACAGGGCATCCTATGTGTGAATTTTGCAGAACACCTTTTTATGGAGATAATGAGCTATATACCCATATGTCAACTGAGCATTATACTTGCCATATATGCCAAAGGCTTCAGCCTGGACAATATGAATACTATAAGAATTATGATGACCTAGAGATTCACTTCCGCCATACCCATTTTCTTTGTGAAGATGAGGCCTGCCTTGCTAAAAAGTTTATAGTCTTCCAGTCTGAATCAGAAATGAAGAGACATAATACTATTGAACATGGTGGCAAGCTATCTCGTTCAAAGCGTAATGCTGCTCTGCAGATACCTACCAGCTTTCGATATCGAAGTAGTAGTGAGCAGGATAATCGCCGTGGTAGACGGACTTTTCGTCGTGATTCTTCTGACAATCAGCTTTCTTTGGCAATTCAAGCAAGTTTGGAAACAGCTAATGTTGATGACGGCTATCACGACCCAATGCCGTCAGCATCGTTATCGAGTGGACAAGTAGCCTCTGACCAGGGAAATATAAGCAACATTGAGTCGTTAATTGAACCATTTGAATCATTATCAACAACAGATCCTAGATACCTTCAAGCCTTGGGCCATTCTAGGAACTCTCAATTGGAGCAGTCATCCTTTCCGCCCCTTTCAACGGCACCTAGCAGCAGTCAACCAAAACCTTTGCATGACTCTGATGCTTTACAGAATAAAAGTATGGCAGCTCATCTTCGCCACCAGAGGAAGGTGTCTGTTCTACATTCTGCTCAAGGTTGGCCAAAATCAAGTCGCACCCCAGTGTTACCATCAAACAATTCAACTCAAGCGTGGCCTGCAATAAATGTGAAACATACAGCATCAAGCAGTTCTGTACAGACTAAGAGTGGTGTTAATGGACCTTCAGTTTCTGGTTACTCAAGTGCTGCTCAGACGCATGTTAAGGCTCAATCTAGTTCTTCAAGTGGGTCAGGTAGTAGCAGTAAGAGCAGTAAGATCAGCCACTCAGCTTCTGCACCCAGTCTTACAGCGATGGCAATTGCTCAACCCTCAGCTGATGAGTTCCCTCCAGTTTCTGCAGCACAGGCACGGAAGGTACCCTCGAGTAGCCAGAGCACAGTGAATGTGGAAGAAGTCCAAATGGCGAACAAAACTCTAGTTGATAAGATACAAACTGCTCTTGAATTTGACCCAGATAGATATGCAGTTTTTAAGGATATATCTGCACAGTATCGTCAAGGTTTGATTGACACGCACTTGTATCTGGATTGTGTGCAGCAGTTTGGTTTGTCACATCTGGTGCTTGAGCTGGCTAGGCTCTGTCCTGATGTTCAGAAACAGAAAGAACTTGTGGAGATCTATAACGCTAGTTTACATAAAGGTGTGTTCCAAGAAAATGGCTGGGCTCAAGATAGTATTCGGTTAAAAGATAAAAGTAGTGCAAAGAAAGGCAAAGGGAAGTCTATAGATCCAGGTAAAGGGAAGTCTATAGATGCTAAAGACAGTGGTTCAAAGGATAAATTAGCTGATAGTATCATGAATAGTGTACGGGAACTGCAGTCAGGCATCAAGCCGTTGGAAGAAGAGGTAGAGGTATTAACAAAGGGTGGCTACCGTGTTGCCAAAGGAAAATCAAAGTTATCATCTGCTGATCAGGAGATTAGGACAGGAGGACAAAACAGTCGACCATCAACCGGTAATGGTTCATCGAATCAAAACACAGGGGATGGAGGTGGAGGGAGCAAGCAGCGAAAGAAAACTTCCAAGTTTCACAGAGTTCGTCTAGGTGACGGTTCAGTTGCTGCACTTTTAGATTTAAAAAATCCAGATTCTGCTTCAGACCCAGAAACAGTTGAAAGATTAGATGACAAAAACAATGCTGGAGTATTGCCCACACGTGGCGTCTGGAGAAATGGTGCTCAGAAACTTTTCTCGTAG 2496 43.51 MDDSCAVCADTLEWVAYGSCGHRDVCSTCVARLRFICGDRRCCICKSESSVVFVTKALGDYTRMVNDFTIFPSEPREGRLGSYWYHEDTETFFDDVDHYKMIKAMCRLSCSECDKIGEDQPNDGSKRRGRFRNIEQLKGHLFHRHKLFMCSLCLEGRKVFICEQKLYNRAQLNQHINTGDSEVDGSESERGGFTGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRLQPGQYEYYKNYDDLEIHFRHTHFLCEDEACLAKKFIVFQSESEMKRHNTIEHGGKLSRSKRNAALQIPTSFRYRSSSEQDNRRGRRTFRRDSSDNQLSLAIQASLETANVDDGYHDPMPSASLSSGQVASDQGNISNIESLIEPFESLSTTDPRYLQALGHSRNSQLEQSSFPPLSTAPSSSQPKPLHDSDALQNKSMAAHLRHQRKVSVLHSAQGWPKSSRTPVLPSNNSTQAWPAINVKHTASSSSVQTKSGVNGPSVSGYSSAAQTHVKAQSSSSSGSGSSSKSSKISHSASAPSLTAMAIAQPSADEFPPVSAAQARKVPSSSQSTVNVEEVQMANKTLVDKIQTALEFDPDRYAVFKDISAQYRQGLIDTHLYLDCVQQFGLSHLVLELARLCPDVQKQKELVEIYNASLHKGVFQENGWAQDSIRLKDKSSAKKGKGKSIDPGKGKSIDAKDSGSKDKLADSIMNSVRELQSGIKPLEEEVEVLTKGGYRVAKGKSKLSSADQEIRTGGQNSRPSTGNGSSNQNTGDGGGGSKQRKKTSKFHRVRLGDGSVAALLDLKNPDSASDPETVERLDDKNNAGVLPTRGVWRNGAQKLFS 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7315449 7319563 + evm.model.ptg000015l.1122 HCH4g1122 543366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1122 831 CDD RING-HC_ZNF598 3 54 IPR041888 -
HCH4g1122 831 PANTHER ZINC FINGER PROTEIN 598 1 825 IPR044288 GO:0016567(PANTHER)|GO:0043022(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0072344(PANTHER)|GO:0072344(InterPro)
HCH4g1122 831 MobiDBLite consensus disorder prediction 736 767 - -
HCH4g1122 831 MobiDBLite consensus disorder prediction 391 521 - -
HCH4g1122 831 MobiDBLite consensus disorder prediction 728 818 - -
HCH4g1122 831 MobiDBLite consensus disorder prediction 443 521 - -
HCH4g1122 831 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
HCH4g1122 831 MobiDBLite consensus disorder prediction 663 693 - -
HCH4g1122 831 MobiDBLite consensus disorder prediction 302 323 - -
HCH4g1122 831 SMART c2h2final6 221 251 IPR013087 -
HCH4g1122 831 SMART c2h2final6 197 220 IPR013087 -
HCH4g1122 831 SMART c2h2final6 252 281 IPR013087 -
HCH4g1122 831 SMART c2h2final6 108 145 IPR013087 -
HCH4g1122 831 MobiDBLite consensus disorder prediction 391 419 - -
HCH4g1122 831 MobiDBLite consensus disorder prediction 305 321 - -
HCH4g1122 831 MobiDBLite consensus disorder prediction 338 360 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1122 K22381 - csv:101214376 1300.42