Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1149 ATGGCGGAATCTGAGCCTCGCGCCAAGCGCCCTAGGATTACGAGGGGGAAAGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACTTGAAATGTAAACCAGGTTCACGTCTAAACCTTGTTATCGGGCCTAATGGATCCGGTAAAAGCTCTATTGTATGTGCTATTGCACTTGGTCTTGGTGGTGAGCCTCAGCTTCTTGGAAGGGCAACCAGTGTTGGAGCATATGTGAAGCGTGGAGAGGAGTCTGGTTATGTTAGAATAACATTAAGGGGTGATACTAAAGAGGAGAAGATTACAATTATGCGCAAAATGGACACACGTAACAGATCTGAGTGGTTGTTCAATGGAAAAGTTGTGCCAAAAAAAGACGTAGCTGGAATTATTCAAAGGTTCAACATTCAAGTTAATAATTTGACCCAATTCTTACCACAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCCGTACAACTTCTAGAAGAGACTGAAAAGGCCGTTGGTGATCCTCAACTTCCCGTCTTACATTACACACTTGTTGAGAAAAGTCGCGACATAAAAAATATAGAGCGAGCCATTGAGAAAAATGGAGACACCTTGGATCAGTTAAAGGCATTGAATGCTGAACAAGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGATGAACTTTTAAAAAAGGTTGAGTCCATGAAAAAGAAATTGCCATGGCTAAAGTACGACATGAAAAAGGCTGAATATATGGAAGCTAAGGAAAAGGAAAGTAATGCCAAAAAAAAGTTAGATGAAGCAGCTAAAACTTTGAATGATCGGAAAGAACCAATTGAGAAACAAAGAAAGGAGAAAGCAACGTTTGATGCTAAAATAAAGAAGTATACCACGCTCATAAATGATAATCACAAGAAAAGGATGGATCTTCAGGAAACTGAAAACCGTTTGGTGGTACAAGTACAAGGAAAATTCAAAGAAATGGAAGAGTTAAAGAAACAAGAAGAATCTCGTCAACAGAGAATCTTGCGAGCCAAAGAGGAACTTGCAGCCGCTGAATTGGAACTTCAAAATTTGCCTCCTTATGAACATCCTAAGGATGAGATTGAGCGATTGCGTGCACAAATTTTGGATCTGGAAGTTTGTGCAAACCAAAAGAGACTTGCAAAGGCAGAAAACGAGAGAAATTTATCCCAAAAAAGAATTTCTTTGAGGCAGTGCTTGGATAGGTTAAAAGATATGGATAATACCAATACCAAAAAACTACATGCACTTCGAAATTCTGGAACTGAGAAGATATTTGAAGCTTATCACTGGCTACAAGAACATCGGCATGAGTTCAAAAAAGAGTTGTATGGTCCAGTGTTGTTGGAGGTCAATGTTTCTAATCGGACTCATGCTGACTACTTAGAAGGTCATATTCCATTCTATGTTTGGAAGGCCTTTATCACTCAACATTCTGATGATCGTGATGTTCTGGTCAAACACTTAAGCTCATTTGGTGTTCCTATAATAAATTATGAGGGAGGTGAAAGCCGCACAAGACAACATTTTGAAGATTCTGAAGAGATTCGTGCATTGGGCATATATTCAAGACTAGACCAAATTTTTGAAGCTCCTGCAGCTGTCAAGGAGGTCTTGACCATGCAATTTGGCTTGGATCATTCATATATTGGATCGAAAGAAACTGATCAGAAGGCAGATGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGCAAATCATTACCGATGGTCTCGCTCTAGATACGGTGGTCACATGTCCGGAAGTGTAGAACCAGTAGATCGCTCAAATCTTCTTTTGTGTAATACGGATGCGGGAGAAATTGATGGGCTTCGGTCTAAGAAAAATGAACTTGAAGAATCTGTTTCTGCTTTAGAAGAAAATTTTAAGTCCTGTCAAATTGAGCTAAGACTGATGGAGGATGAAGAAGCTAAACTTCGCAAGCAACGGGATGATATTATAAATACTGTGCAACATGAGAAGAGAAAACGCCGTGAAATGGAACATCGCATTGATCAGAGGAAAAGGAAATTAGAATCTATGGAGCGGGAGGATGACCTGGATACTGTTGTGGCCAAGCTTGTTGACCAAGCTGCAAAATTTAACATCCAGCGGTTCCACTGTGCAATTGAAATTAAGCATTTACTTGTTGAGGCCCTTTCTCACAGACAGAGCTTAACTAAGAAGCATATGGCTTCTATTGAAGTTGATGCAAAGATTAGAGAATTGGAGGTGAATTTGAAGCAGCATGAAAAGTTTGCTTTGCAAGCATCAGTGGAATTTGAGTATTGTAAGAAAGAAGTTGAGGAATATCGACAACAACTTTTGGCTGCCAAGAAGCATGCTGAGTCTATTGCTGTGATCACCCCCGATCTTGAAAAGGAATTTCTTGAGATGGCAACTACAGTCGAGGAATTGGAGGCTGCTATTCAAGATAATATTTCTCAAGCTAATTCCATTCTGTTCTTGAACCACAATGTGCTTGAGGAATATGAACATCGTCAGCGTCAGATAAATTCCATGACACAAAAACTAGAAGCTGATAGGCATGAACTTGGAAAGTGTATGGCTGATATTGATAAGCTGAAGGGAAATTGGCTCCCAACTTTGAGGAAACTTGTTTCTCAGATAAATGAGACTTTTAGTCGCAACTTCCAAGAGATGGCTGTTGCTGGAGAAGTATTGTTAGATGAGCGTGATATGGAATTTGATCAATTTGGGATACTCATTAAAGTGAAGTTCAGACAATCAGGTCAGCTTCAGGTTCTTAGTGCTCATCATCAGTCTGGCGGGGAACGCTCGGTGTCTACAATTCTCTATCTTGTTTCCCTTCAAGACCTTACTAACTGTCCATTTAGGGTAGTTGATGAGATAAACCAAGGAATGGATCCTATAAATGAACGAAAAATGTTCCAGCAATTGGTGAGAGCTGCCAGCCAACCAAATACACCACAGTGTTTTCTACTTACTCCAAAGTTACTTCCAGAGTTGGAATATAGCGAGGCCTGTAGTATATTGAATATAATGAATGGGCCTTGGATAGAGCAACCCTCGAGAGTGTGGAGCAAGGGAGAAAGTTGGGGGTCGTTAATGAGCTATGTAGGAGAAAGCAGATGCTAA 3162 40.07 MAESEPRAKRPRITRGKDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGDTKEEKITIMRKMDTRNRSEWLFNGKVVPKKDVAGIIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPVLHYTLVEKSRDIKNIERAIEKNGDTLDQLKALNAEQEKDVERVRQRDELLKKVESMKKKLPWLKYDMKKAEYMEAKEKESNAKKKLDEAAKTLNDRKEPIEKQRKEKATFDAKIKKYTTLINDNHKKRMDLQETENRLVVQVQGKFKEMEELKKQEESRQQRILRAKEELAAAELELQNLPPYEHPKDEIERLRAQILDLEVCANQKRLAKAENERNLSQKRISLRQCLDRLKDMDNTNTKKLHALRNSGTEKIFEAYHWLQEHRHEFKKELYGPVLLEVNVSNRTHADYLEGHIPFYVWKAFITQHSDDRDVLVKHLSSFGVPIINYEGGESRTRQHFEDSEEIRALGIYSRLDQIFEAPAAVKEVLTMQFGLDHSYIGSKETDQKADEVSKLGILDFWTPANHYRWSRSRYGGHMSGSVEPVDRSNLLLCNTDAGEIDGLRSKKNELEESVSALEENFKSCQIELRLMEDEEAKLRKQRDDIINTVQHEKRKRREMEHRIDQRKRKLESMEREDDLDTVVAKLVDQAAKFNIQRFHCAIEIKHLLVEALSHRQSLTKKHMASIEVDAKIRELEVNLKQHEKFALQASVEFEYCKKEVEEYRQQLLAAKKHAESIAVITPDLEKEFLEMATTVEELEAAIQDNISQANSILFLNHNVLEEYEHRQRQINSMTQKLEADRHELGKCMADIDKLKGNWLPTLRKLVSQINETFSRNFQEMAVAGEVLLDERDMEFDQFGILIKVKFRQSGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPELEYSEACSILNIMNGPWIEQPSRVWSKGESWGSLMSYVGESRC 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7611286 7659253 - evm.model.ptg000015l.1149 HCH4g1149 543393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1149 1053 Gene3D - 847 1023 IPR027417 -
HCH4g1149 1053 Coils Coil 195 229 - -
HCH4g1149 1053 Coils Coil 248 279 - -
HCH4g1149 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 996 IPR027417 -
HCH4g1149 1053 Coils Coil 842 862 - -
HCH4g1149 1053 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1045 IPR027131 GO:0000724(PANTHER)|GO:0000724(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006281(InterPro)|GO:0016887(InterPro)|GO:0030915(PANTHER)|GO:0030915(InterPro)
HCH4g1149 1053 Pfam RecF/RecN/SMC N terminal domain 25 991 IPR003395 -
HCH4g1149 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 751 1004 IPR027417 -
HCH4g1149 1053 Coils Coil 622 698 - -
HCH4g1149 1053 Gene3D - 24 218 IPR027417 -
HCH4g1149 1053 FunFam Structural maintenance of chromosomes 5 849 1020 - -
HCH4g1149 1053 Coils Coil 322 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1149 K22803 - - csv:101210248 1818.9
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g1149 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 67.9 0.0e+00 1339.3
HCH11g1082 . 13 1052 Structural Maintenance of Chromosomes family AT5G07660 61.7 0.0e+00 1214.1
HCH11g1082 . 10 1052 Structural Maintenance of Chromosomes family AT5G61460 65.2 0.0e+00 1307.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32