Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1190 ATGACAGATCCTTACTCCAATTTCTTCACAAAATGGTTCAACTTCATCCCTTTGCCTCCTCCCCACTTCAACAATAACAACAACAACCCACAGAACTCATCGCCTCCAAATTCTCCCTTTCAATGCCAACAGCAACCCTTCTTCTTCCCCTCTTCCACAACCCCTCCTCCAAAGGAAGCCCTCCCTTTATTAAACAGCCTTAGCCTCAGTCCCATTAGCCCTGAACCCATTCATGAATTGCCCTCCAGCTGCAGCTTGGAAGAAGATCATGAAACTGCTGCCCTAGATATCAGCCTCTCTTGCCCTAGTAATTCTGATCTGGAATATTCCAAGCCTGTTTCTCAGTGTTCTAATTCAGATTTGGCTGAGAAAGAAGAGGAAAATGAGATTTCTAGACACCCTAATTTGGAGAGTCTAAGCAAAGGCCAGTTCTGGATTCCCACCCCTTCTCAGATCCTCATTGGTCCTACCCAGTTCTCTTGCCCACTTTGCTCCAAAGCCTTCAACAGATACAATAACCTTCAGATGCATATGTGGGGACATGGCTCTCAATACAGGAAAGGTCCAGACTCCCTTAAAGGAACTCAGCCAACAGCCATGCTTAGGCTCCCTTGCTACTGCTGTGCACCGGGCTGCAAGCACAACATCGACAACCCACGGTCGAGGCCGCTCAAGGATTTTCGAACCCTGCAAACACATTACAAGCGCAAGCATGGCATCAAGCCCTTCACTTGCAGAAAATGTAGCAAAGCTTTCGCCGTTAAAGGCGATTGGCGAACCCATGAGAAGAATTGTGGCAAAATTTGGTATTGCTTTTGTGGCTCTGATTTCAAACACAAACGCTCCCTCAAAGACCATATCAAGGCCTTTGGACGGGGCCATGGAGCTCTCGGCCTTGATTACTTTGAAGATGATAATGAAGCTGCATCTGAAGTTGATCATGAAGCTGATAACTTGAATCTTTAA 966 46.58 MTDPYSNFFTKWFNFIPLPPPHFNNNNNNPQNSSPPNSPFQCQQQPFFFPSSTTPPPKEALPLLNSLSLSPISPEPIHELPSSCSLEEDHETAALDISLSCPSNSDLEYSKPVSQCSNSDLAEKEEENEISRHPNLESLSKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCYCCAPGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCSKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFEDDNEAASEVDHEADNLNL 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7956040 7958689 - evm.model.ptg000015l.1190 HCH4g1190 543434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1190 321 MobiDBLite consensus disorder prediction 23 49 - -
HCH4g1190 321 MobiDBLite consensus disorder prediction 120 134 - -
HCH4g1190 321 SUPERFAMILY beta-beta-alpha zinc fingers 152 181 IPR036236 -
HCH4g1190 321 FunFam Zinc finger protein WIP2 212 294 - -
HCH4g1190 321 SMART c2h2final6 159 181 IPR013087 -
HCH4g1190 321 SMART c2h2final6 243 263 IPR013087 -
HCH4g1190 321 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 242 266 - -
HCH4g1190 321 SUPERFAMILY beta-beta-alpha zinc fingers 226 263 IPR036236 -
HCH4g1190 321 PANTHER ZINC FINGER PROTEIN WIP2 51 316 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
HCH4g1190 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 186 IPR013087 -
HCH4g1190 321 ProSitePatterns Zinc finger C2H2 type domain signature. 161 181 IPR013087 -
HCH4g1190 321 Gene3D Classic Zinc Finger 221 294 - -
HCH4g1190 321 Gene3D Classic Zinc Finger 158 181 - -
HCH4g1190 321 MobiDBLite consensus disorder prediction 112 134 - -
HCH4g1190 321 MobiDBLite consensus disorder prediction 23 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1180 HCH-Chr3:42453304 HCH4g1190 HCH-Chr4:7956040 2.20E-84 dispersed
HCH4g1190 HCH-Chr4:7956040 HCH9g1110 HCH-Chr9:13492435 6.20E-95 dispersed
HCH2g1387 HCH-Chr2:55650887 HCH4g1190 HCH-Chr4:7956040 1.10E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33500 PF00096 zf-C2H2 0.0017 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1190 - - - 0.0