Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH4g1190 | ATGACAGATCCTTACTCCAATTTCTTCACAAAATGGTTCAACTTCATCCCTTTGCCTCCTCCCCACTTCAACAATAACAACAACAACCCACAGAACTCATCGCCTCCAAATTCTCCCTTTCAATGCCAACAGCAACCCTTCTTCTTCCCCTCTTCCACAACCCCTCCTCCAAAGGAAGCCCTCCCTTTATTAAACAGCCTTAGCCTCAGTCCCATTAGCCCTGAACCCATTCATGAATTGCCCTCCAGCTGCAGCTTGGAAGAAGATCATGAAACTGCTGCCCTAGATATCAGCCTCTCTTGCCCTAGTAATTCTGATCTGGAATATTCCAAGCCTGTTTCTCAGTGTTCTAATTCAGATTTGGCTGAGAAAGAAGAGGAAAATGAGATTTCTAGACACCCTAATTTGGAGAGTCTAAGCAAAGGCCAGTTCTGGATTCCCACCCCTTCTCAGATCCTCATTGGTCCTACCCAGTTCTCTTGCCCACTTTGCTCCAAAGCCTTCAACAGATACAATAACCTTCAGATGCATATGTGGGGACATGGCTCTCAATACAGGAAAGGTCCAGACTCCCTTAAAGGAACTCAGCCAACAGCCATGCTTAGGCTCCCTTGCTACTGCTGTGCACCGGGCTGCAAGCACAACATCGACAACCCACGGTCGAGGCCGCTCAAGGATTTTCGAACCCTGCAAACACATTACAAGCGCAAGCATGGCATCAAGCCCTTCACTTGCAGAAAATGTAGCAAAGCTTTCGCCGTTAAAGGCGATTGGCGAACCCATGAGAAGAATTGTGGCAAAATTTGGTATTGCTTTTGTGGCTCTGATTTCAAACACAAACGCTCCCTCAAAGACCATATCAAGGCCTTTGGACGGGGCCATGGAGCTCTCGGCCTTGATTACTTTGAAGATGATAATGAAGCTGCATCTGAAGTTGATCATGAAGCTGATAACTTGAATCTTTAA | 966 | 46.58 | MTDPYSNFFTKWFNFIPLPPPHFNNNNNNPQNSSPPNSPFQCQQQPFFFPSSTTPPPKEALPLLNSLSLSPISPEPIHELPSSCSLEEDHETAALDISLSCPSNSDLEYSKPVSQCSNSDLAEKEEENEISRHPNLESLSKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCYCCAPGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCSKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFEDDNEAASEVDHEADNLNL | 321 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7956040 | 7958689 | - | evm.model.ptg000015l.1190 | HCH4g1190 | 543434 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH4g1190 | 321 | MobiDBLite | consensus disorder prediction | 23 | 49 | - | - | |
HCH4g1190 | 321 | MobiDBLite | consensus disorder prediction | 120 | 134 | - | - | |
HCH4g1190 | 321 | SUPERFAMILY | beta-beta-alpha zinc fingers | 152 | 181 | IPR036236 | - | |
HCH4g1190 | 321 | FunFam | Zinc finger protein WIP2 | 212 | 294 | - | - | |
HCH4g1190 | 321 | SMART | c2h2final6 | 159 | 181 | IPR013087 | - | |
HCH4g1190 | 321 | SMART | c2h2final6 | 243 | 263 | IPR013087 | - | |
HCH4g1190 | 321 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 242 | 266 | - | - | |
HCH4g1190 | 321 | SUPERFAMILY | beta-beta-alpha zinc fingers | 226 | 263 | IPR036236 | - | |
HCH4g1190 | 321 | PANTHER | ZINC FINGER PROTEIN WIP2 | 51 | 316 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) | |
HCH4g1190 | 321 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 159 | 186 | IPR013087 | - | |
HCH4g1190 | 321 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 161 | 181 | IPR013087 | - | |
HCH4g1190 | 321 | Gene3D | Classic Zinc Finger | 221 | 294 | - | - | |
HCH4g1190 | 321 | Gene3D | Classic Zinc Finger | 158 | 181 | - | - | |
HCH4g1190 | 321 | MobiDBLite | consensus disorder prediction | 112 | 134 | - | - | |
HCH4g1190 | 321 | MobiDBLite | consensus disorder prediction | 23 | 62 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH3g1180 | HCH-Chr3:42453304 | HCH4g1190 | HCH-Chr4:7956040 | 2.20E-84 | dispersed | |
HCH4g1190 | HCH-Chr4:7956040 | HCH9g1110 | HCH-Chr9:13492435 | 6.20E-95 | dispersed | |
HCH2g1387 | HCH-Chr2:55650887 | HCH4g1190 | HCH-Chr4:7956040 | 1.10E-102 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33500 | PF00096 | zf-C2H2 | 0.0017 | CL0361 | HCH | TF |
Pathway information
