Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g1191 | ATGAGGATGAGATCTACGGACATGACCGCAGACTCACGAGAAGAAACTAAACACCGGCTGCAGCAAATAAATACCCGCTCCCTCCCATTTCCCAATGAGAAAAAGTCGGAAAGTGGGACCCATCCACATCGGTCAGCGGTCAGCCTTGCCCGCTCATCTAACCAAAGCCCTATTCCTTCACTCCTCAAAATCGCCTCTCTCTTTCTCTTCCTTAAGAAAAAAACCCCGATTTTCCAGGCGGACTTCTCCAATAATCCCTCACCGGCCACCGCTTTTCTCCCAAAGGTTCAACATCCCACCGTATTTCAGAAGTTTGCTGGTCAGCTCCACCTCCAATCAAGGGTTTCTACAGGTTTAATTGGTTCTGACGATGGCTTCAGGAACCCTGCTCTTTACCAGAGACGTGCATCCAATAGAAATTATTCCAACCCGGGATTTCAATACCCTGTCATGCAATCCTGTGCTTCATCAATGGATCTTTCTAGGGTTGCCTCAACCGCCTCCCCCATTTTTGTCGCTGCCCCAGCGGAGAAAGGCAATTTTCTGATTGATTTTCTTATGGGTGGAGTTTCTGCGGCTGTATCCAAGACGGCTGCTGCCCCAATTGAGCGTGTCAAGCTTTTAATTCAAAATCAGGATGAGATGCTTAAAGCTGGACGGCTATCAGAGCCATATAAGGGTATTGGTGAGTGTTTTAGCCGCACTATAAAAGATGAGGGATTTGGTTCACTGTGGAGGGGAAACACTGCCAATGTTATCCGTTATTTCCCCACTCAAGCCTTGAACTTTGCATTTAAGGATTACTTTAAAAGACTTTTCAACTTCAAGAAAGATAGGGATGGTTACTGGAAATGGTTTGCTGGTAACTTGGCTTCGGGTGGTGCAGCCGGTGCTTCATCCCTTCTATTTGTTTACTCTCTTGACTATGCTCGTACCCGATTGGCAAATGATTCCAAAGCTGCTAAGAAAGGTGGAGAAAGGCAATTCAACGGTCTGGTTGATGTCTACAAGAAGACATTAAAATCAGATGGTATTGCCGGTCTTTACCGTGGGTTTAACATTTCTTGTGTTGGTATCATTGTGTACCGTGGTCTATACTTTGGAATGTATGATTCTCTGAAGCCAGTTCTATTGACTGGAAATTTGCAGGATAGCTTCTTTGCTAGCTTTGCCCTTGGTTGGCTCATCACCAATGGTGCTGGGCTTGCATCCTACCCCATCGACACTGTTCGCAGAAGGATGATGATGACGTCTGGTGAAGCAGTCAAGTATAAGAGCTCATTTGATGCTTTCTCTCAGATCTTGAAGAATGAAGGTGCCAAGTCTCTCTTCAAGGGTGCTGGCGCCAACATTCTGCGTGCCGTCGCTGGTGCTGGTGTGCTCGCTGGTTATGATAAGTTACAGATGTTGATGAAAATTCCCCCAGAGTTTCGTGGACTTGATCCGGCGATTTTTTTCCCGTCAATAATTTAG | 1473 | 46.16 | MRMRSTDMTADSREETKHRLQQINTRSLPFPNEKKSESGTHPHRSAVSLARSSNQSPIPSLLKIASLFLFLKKKTPIFQADFSNNPSPATAFLPKVQHPTVFQKFAGQLHLQSRVSTGLIGSDDGFRNPALYQRRASNRNYSNPGFQYPVMQSCASSMDLSRVASTASPIFVAAPAEKGNFLIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKAGRLSEPYKGIGECFSRTIKDEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDSKAAKKGGERQFNGLVDVYKKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGNLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSFDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQMLMKIPPEFRGLDPAIFFPSII | 490 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 7974266 | 7976766 | + | evm.model.ptg000015l.1191 | HCH4g1191 | 543435 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g1191 | 490 | SUPERFAMILY | Mitochondrial carrier | 179 | 466 | IPR023395 | - | |
| HCH4g1191 | 490 | PRINTS | Adenine nucleotide translocator signature | 225 | 246 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| HCH4g1191 | 490 | PRINTS | Adenine nucleotide translocator signature | 389 | 405 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| HCH4g1191 | 490 | PRINTS | Adenine nucleotide translocator signature | 284 | 297 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| HCH4g1191 | 490 | PRINTS | Adenine nucleotide translocator signature | 258 | 270 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| HCH4g1191 | 490 | PRINTS | Adenine nucleotide translocator signature | 181 | 193 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| HCH4g1191 | 490 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| HCH4g1191 | 490 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 179 | 272 | IPR018108 | - | |
| HCH4g1191 | 490 | PRINTS | Mitochondrial carrier protein signature | 247 | 267 | IPR002067 | GO:0055085(InterPro) | |
| HCH4g1191 | 490 | PRINTS | Mitochondrial carrier protein signature | 349 | 367 | IPR002067 | GO:0055085(InterPro) | |
| HCH4g1191 | 490 | PRINTS | Mitochondrial carrier protein signature | 197 | 211 | IPR002067 | GO:0055085(InterPro) | |
| HCH4g1191 | 490 | PRINTS | Mitochondrial carrier protein signature | 299 | 317 | IPR002067 | GO:0055085(InterPro) | |
| HCH4g1191 | 490 | PRINTS | Mitochondrial carrier protein signature | 184 | 197 | IPR002067 | GO:0055085(InterPro) | |
| HCH4g1191 | 490 | PRINTS | Mitochondrial carrier protein signature | 393 | 415 | IPR002067 | GO:0055085(InterPro) | |
| HCH4g1191 | 490 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 284 | 376 | IPR018108 | - | |
| HCH4g1191 | 490 | PANTHER | ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED | 177 | 472 | IPR002113 | GO:0005471(InterPro)|GO:0005471(PANTHER)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| HCH4g1191 | 490 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 384 | 470 | IPR018108 | - | |
| HCH4g1191 | 490 | FunFam | ADP,ATP carrier protein, mitochondrial | 182 | 474 | - | - | |
| HCH4g1191 | 490 | Pfam | Mitochondrial carrier protein | 284 | 378 | IPR018108 | - | |
| HCH4g1191 | 490 | Pfam | Mitochondrial carrier protein | 384 | 471 | IPR018108 | - | |
| HCH4g1191 | 490 | Pfam | Mitochondrial carrier protein | 179 | 276 | IPR018108 | - | |
| HCH4g1191 | 490 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
| HCH4g1191 | 490 | Gene3D | Mitochondrial carrier domain | 182 | 473 | IPR023395 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH4g1191 | HCH-Chr4:7974266 | HCH7g0137 | HCH-Chr7:925822 | 2.10E-158 | dispersed | |
| HCH4g1191 | HCH-Chr4:7974266 | HCH4g1192 | HCH-Chr4:7977685 | 8.30E-200 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH4g1191 | K05863 | - | csv:101203484 | 661.759 |